STACAS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
Comparison · Analytics
qtl2fst vs TidyDensity
A side-by-side editorial comparison of qtl2fst and TidyDensity — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2fst vs TidyDensity: at a glance
What is qtl2fst?
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
What is TidyDensity?
A distribution catalogue that grows by one family at a time, and rarely breaks anything.
TidyDensity generates tidy-format random data from statistical distributions, with parameter estimation, AIC calculation, summary tables and automatic plotting for each one. Its releases follow a fixed template — breaking changes, new features, minor fixes — and the breaking section is usually empty. Growth comes distribution by distribution: Bernoulli, Burr, triangular, chi-square, zero-truncated negative binomial and others each arrive with a matching set of param_estimate, aic and stats_tbl helpers.
qtl2fst vs TidyDensity: editorial side-by-side
qtl2fst
0.0ANALYTICS
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
◆ Current state
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
◆ Where it's heading
The package has settled into the role of a stable satellite of R/qtl2: it tracks the parent package's conventions rather than setting its own. The cores=0 change in 0.32 arrived alongside the identical change in qtl2convert, so the parallel-computing default is being standardized across the maintainer's packages at once. Release intervals have stretched from months to years.
◆ Prediction
Further releases will most likely mirror changes originating in R/qtl2 or CRAN checks, in the same follow-the-parent pattern as 0.24 and 0.32.
TidyDensity
0.0ANALYTICS
A distribution catalogue that grows by one family at a time, and rarely breaks anything.
◆ Current state
TidyDensity generates tidy-format random data from statistical distributions, with parameter estimation, AIC calculation, summary tables and automatic plotting for each one. Its releases follow a fixed template — breaking changes, new features, minor fixes — and the breaking section is usually empty. Growth comes distribution by distribution: Bernoulli, Burr, triangular, chi-square, zero-truncated negative binomial and others each arrive with a matching set of param_estimate, aic and stats_tbl helpers.
◆ Where it's heading
The package is filling out a matrix rather than changing shape — every new distribution gets the same four or five companion functions, so the surface grows predictably and the design does not. What variation exists comes from utilities that work across distributions: MCMC sampling, bootstrap helpers, time series conversion, distribution comparison. The two genuine breaking changes in this window were both internal reworks, moving generation onto data.table and rewriting quantile normalization for speed.
◆ Prediction
The established pattern of adding a distribution with its full helper set is the most likely continuation. Recent releases have been small, suggesting the catalogue is approaching the distributions its author considers worth covering.
Alternatives to qtl2fst and TidyDensity
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2fst or TidyDensity.
ggtrace
A debugger for ggplot2's internals, hardening its grip as the internals it traces keep moving.
kde1d
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
svines
Stationary vine copulas for time series, released in lockstep with the rest of Nagler's vine stack.
gghighlight
A single-purpose ggplot2 extension that has spent six years tracking ggplot2 instead of growing.
rtrek
A Star Trek data package that became a Memory Alpha web client and has been patching scrapers ever since.
See all qtl2fst alternatives → · See all TidyDensity alternatives →
Recent activity from qtl2fst and TidyDensity
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2fstcores=0 now leaves one core free instead of taking all
- 11mo agoTidyDensityquantile_normalize rewritten, changing its output
- 1y agoTidyDensityDocumentation corrections for two distribution functions
- 1y agoqtl2fstWindows fix for the replace_path() example
- 2y agoqtl2fstDocumentation link fix
- 2y agoTidyDensityZero-truncated distributions and AIC helpers added in bulk
- 2y agoTidyDensityMCMC sampling and quantile normalization join the utilities
- 2y agoTidyDensityGeneration moves to data.table; native pipe raises the R floor
- 2y agoTidyDensityDistributions convertible to time series objects
- 4y agoqtl2fstCreates missing directories instead of erroring out
- 5y agoqtl2fstTest coverage for qtl2 functions against fst-backed probabilities
- 6y agoqtl2fstDocumentation and metadata cleanup for CRAN
Frequently asked questions
What is the difference between qtl2fst and TidyDensity?
Both compete on the same themes — r-package — within Analytics. qtl2fst and TidyDensity are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2fst better than TidyDensity?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2fst and TidyDensity are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2fst?
Top qtl2fst alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2fst alternatives" section above for the current picks, or visit /alternatives/qtl2fst for the full list with editorial commentary on each.
What are the best alternatives to TidyDensity?
Top TidyDensity alternatives in Analytics are ranked by recent ship velocity. Browse the "TidyDensity alternatives" section above for the current picks, or visit /alternatives/tidydensity for the full list with editorial commentary on each.