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Comparison · Analytics
qtl2fst vs robma
A side-by-side editorial comparison of qtl2fst and robma — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2fst vs robma: at a glance
What is qtl2fst?
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
What is robma?
RoBMA 4.0 tears out its own constructor surface and rebuilds on one class hierarchy
RoBMA fits robust Bayesian model-averaged meta-analyses that adjust for publication bias. The 3.x line grew by accretion: separate constructors for each model family (RoBMA.reg, NoBMA, BiBMA and their .reg variants), a spike-and-slab algorithm in 3.3.0 that made estimation fast enough to matter, then a steady stream of post-estimation tooling gated on that algorithm — heterogeneity summaries, residuals, funnel plots, z-curve conversion, predict, extract, pooled and adjusted effects. Version 4.0.0 in May 2026 collapses all of it into a unified brma class hierarchy.
qtl2fst vs robma: editorial side-by-side
qtl2fst
0.0ANALYTICS
The out-of-memory backend for R/qtl2, feature-complete since 2020 and now purely on upkeep
◆ Current state
qtl2fst backs R/qtl2 genotype probabilities with on-disk fst files so large crosses don't have to fit in RAM. Its defining release was 0.22 in 2020, which added calc_genoprob_fst() and genoprob_to_alleleprob_fst() to fuse calculation and storage in one step. The five releases since are documentation links, directory-creation robustness, a Windows example fix, and — in 0.32 — a change to how cores=0 is interpreted.
◆ Where it's heading
The package has settled into the role of a stable satellite of R/qtl2: it tracks the parent package's conventions rather than setting its own. The cores=0 change in 0.32 arrived alongside the identical change in qtl2convert, so the parallel-computing default is being standardized across the maintainer's packages at once. Release intervals have stretched from months to years.
◆ Prediction
Further releases will most likely mirror changes originating in R/qtl2 or CRAN checks, in the same follow-the-parent pattern as 0.24 and 0.32.
robma
0.0ANALYTICS
RoBMA 4.0 tears out its own constructor surface and rebuilds on one class hierarchy
◆ Current state
RoBMA fits robust Bayesian model-averaged meta-analyses that adjust for publication bias. The 3.x line grew by accretion: separate constructors for each model family (RoBMA.reg, NoBMA, BiBMA and their .reg variants), a spike-and-slab algorithm in 3.3.0 that made estimation fast enough to matter, then a steady stream of post-estimation tooling gated on that algorithm — heterogeneity summaries, residuals, funnel plots, z-curve conversion, predict, extract, pooled and adjusted effects. Version 4.0.0 in May 2026 collapses all of it into a unified brma class hierarchy.
◆ Where it's heading
The 3.x series solved the modeling problem and left an interface problem behind: a caller had to know which of six constructors matched their data type, and argument names differed across them. 4.0.0 resolves that by making the model family a set of arguments rather than a function name, and by standardizing input naming on metafor-style conventions. It shipped one day after BayesTools 0.3.0, the author's own upstream infrastructure package, whose new standardization and prior-transformation machinery this rewrite depends on.
◆ Prediction
A rewrite this wide usually needs a follow-up, so expect 4.0.x patches addressing migration gaps as users hit the removed constructors and renamed arguments.
Alternatives to qtl2fst and robma
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2fst or robma.
gcube
gcube's recent releases are all packaging metadata, not simulation code
cubist
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
ggstats
ggstats keeps widening what a coefficient or Likert plot can be
ecodive
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
simStateSpace
State-space data simulation for R, filled in one function at a time
See all qtl2fst alternatives → · See all robma alternatives →
Recent activity from qtl2fst and robma
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2fstcores=0 now leaves one core free instead of taking all
- 3mo agorobmaUnifies six model constructors into one brma class hierarchy ⚡
- 8mo agorobmaRoBMA 3.6.1
- 11mo agorobmaRoBMA 3.6.0
- 1y agorobmaRoBMA 3.5.1
- 1y agorobmaRoBMA 3.5.0
- 1y agorobmaRoBMA 3.4.0
- 1y agoqtl2fstWindows fix for the replace_path() example
- 2y agoqtl2fstDocumentation link fix
- 4y agoqtl2fstCreates missing directories instead of erroring out
- 5y agoqtl2fstTest coverage for qtl2 functions against fst-backed probabilities
- 6y agoqtl2fstDocumentation and metadata cleanup for CRAN
Frequently asked questions
What is the difference between qtl2fst and robma?
Both compete on the same themes — r-package — within Analytics. qtl2fst and robma are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2fst better than robma?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2fst and robma are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2fst?
Top qtl2fst alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2fst alternatives" section above for the current picks, or visit /alternatives/qtl2fst for the full list with editorial commentary on each.
What are the best alternatives to robma?
Top robma alternatives in Analytics are ranked by recent ship velocity. Browse the "robma alternatives" section above for the current picks, or visit /alternatives/robma for the full list with editorial commentary on each.