STACAS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
Comparison · Analytics
qtl2convert vs reda
A side-by-side editorial comparison of qtl2convert and reda — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
qtl2convert vs reda: at a glance
What is qtl2convert?
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
What is reda?
A mature recurrent-event toolkit in careful maintenance, shedding weight rather than adding surface.
reda provides nonparametric mean cumulative function estimation, gamma-frailty rate regression, and event-data simulation for recurrent-event survival analysis. The core API settled at 0.5.0 when Recur() replaced Survr() and the MCF internals moved to C++. Everything since has been consolidation: small argument additions, method completions, and CRAN hygiene.
qtl2convert vs reda: editorial side-by-side
qtl2convert
0.0ANALYTICS
A conversion utility in pure maintenance mode, tracking R-devel breakage release by release
◆ Current state
qtl2convert is the format-shim of the R/qtl2 ecosystem: it moves genotype probabilities and genetic maps between DOQTL, R/qtl and R/qtl2 representations. The last three releases contain no new conversion functions at all — 0.32 fixed a C string comparison flagged by CRAN, 0.34 restored attribute-clearing that R-devel 4.7 changed underneath the package, and 0.36 adjusted parallel core defaults plus a test tweak. The functional surface has been stable since 0.26 added cross2_ril_to_genril().
◆ Where it's heading
This is a package whose release cadence is driven by its dependencies, not its roadmap. Two of the last three releases exist purely because upstream R or CRAN's check suite moved; the maintainer responds within weeks and ships. The cores=0 change in 0.36 is the only user-visible behavior shift in over a year, and it landed simultaneously in sibling package qtl2fst — this is a maintainer-wide convention change, not a qtl2convert decision.
◆ Prediction
Expect the next release to be triggered by another R-devel or CRAN check change rather than a feature request, following the same pattern as 0.32 and 0.34.
reda
0.0ANALYTICS
A mature recurrent-event toolkit in careful maintenance, shedding weight rather than adding surface.
◆ Current state
reda provides nonparametric mean cumulative function estimation, gamma-frailty rate regression, and event-data simulation for recurrent-event survival analysis. The core API settled at 0.5.0 when Recur() replaced Survr() and the MCF internals moved to C++. Everything since has been consolidation: small argument additions, method completions, and CRAN hygiene.
◆ Where it's heading
The last three releases contain no new modelling capability at all — a dependency reshuffle, a test-example correction, and a print-order fix. The package is being kept installable and correct rather than extended. Its tightest coupling is to splines2, a sibling package from the same maintainer, which supplies the derivative machinery reda depends on.
◆ Prediction
Expect continued small-cadence CRAN-compliance releases tracking ggplot2 and splines2 changes. The entries show no in-progress feature work, so a substantive release would have to arrive without warning from this feed.
Alternatives to qtl2convert and reda
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl2convert or reda.
ggtrace
A debugger for ggplot2's internals, hardening its grip as the internals it traces keep moving.
kde1d
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
svines
Stationary vine copulas for time series, released in lockstep with the rest of Nagler's vine stack.
gghighlight
A single-purpose ggplot2 extension that has spent six years tracking ggplot2 instead of growing.
rtrek
A Star Trek data package that became a Memory Alpha web client and has been patching scrapers ever since.
See all qtl2convert alternatives → · See all reda alternatives →
Recent activity from qtl2convert and reda
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoqtl2convertcores=0 now leaves one core free instead of taking all
- 2mo agoqtl2convertAttribute-clearing fix for R-devel 4.7
- 3mo agoqtl2convertC string comparison fix in encode_geno()
- 11mo agoredaggplot2 and grDevices demoted to Suggests
- 1y agoredaTest example and documentation typo fixes
- 2y agoqtl2convertBug fix in probs_doqtl_to_qtl2()
- 4y agoqtl2convertMaintenance release for a NEWS.md typo
- 4y agoredasimEvent() gains a user-supplied rate bound
- 4y agoqtl2convertAdds cross2_ril_to_genril() for RIL cross conversion
- 5y agoredasummary() method completes the Recur object
- 5y agoredaDerivatives sourced from splines2's deriv method
- 6y agoredaMCF estimates can now skip variance computation
Frequently asked questions
What is the difference between qtl2convert and reda?
Both compete on the same themes — r-package — within Analytics. qtl2convert and reda are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl2convert better than reda?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl2convert and reda are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl2convert?
Top qtl2convert alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl2convert alternatives" section above for the current picks, or visit /alternatives/qtl2convert for the full list with editorial commentary on each.
What are the best alternatives to reda?
Top reda alternatives in Analytics are ranked by recent ship velocity. Browse the "reda alternatives" section above for the current picks, or visit /alternatives/reda for the full list with editorial commentary on each.