pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
PEIMAN2 vs TrendLSW
A side-by-side editorial comparison of PEIMAN2 and TrendLSW — release velocity, themes, recent moves, and the top alternatives to consider.
PEIMAN2 vs TrendLSW: at a glance
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
What is TrendLSW?
Wavelet trend estimation tightens the defaults it shipped with.
TrendLSW estimates trend and evolutionary wavelet spectrum for locally stationary time series through a single TLSW() entry point. Its history since the first CRAN appearance is short and centres on defaults and plotting around that function, plus one dataset addition. The latest entry carries both the 1.0.4 and 1.0.3 notes in one body.
PEIMAN2 vs TrendLSW: editorial side-by-side
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
TrendLSW
0.0INFRA · APIS
Wavelet trend estimation tightens the defaults it shipped with.
◆ Current state
TrendLSW estimates trend and evolutionary wavelet spectrum for locally stationary time series through a single TLSW() entry point. Its history since the first CRAN appearance is short and centres on defaults and plotting around that function, plus one dataset addition. The latest entry carries both the 1.0.4 and 1.0.3 notes in one body.
◆ Where it's heading
The package has moved from getting onto CRAN to correcting the choices it launched with: the spectrum filter defaults were swapped to their trend counterparts, the plot.CI switch was removed in favour of inferring it from what was actually computed, and an example was shrunk to fit check timings. This is consolidation around a stable API rather than expansion.
◆ Prediction
Further releases most likely continue tuning TLSW() defaults and plot behaviour; the entries show no work toward new estimators.
Alternatives to PEIMAN2 and TrendLSW
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either PEIMAN2 or TrendLSW.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
See all PEIMAN2 alternatives → · See all TrendLSW alternatives →
Recent activity from PEIMAN2 and TrendLSW
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 8mo agoTrendLSWTrend filter defaults replace spectrum defaults; plot.CI dropped
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 2y agoTrendLSWNew z.acc and z.labels datasets shipped with the package
- 2y agoTrendLSWDescription field and plot.TLSW documentation fixes
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
Frequently asked questions
What is the difference between PEIMAN2 and TrendLSW?
They serve adjacent needs but don't currently overlap on shipped themes. PEIMAN2 and TrendLSW are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is PEIMAN2 better than TrendLSW?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. PEIMAN2 and TrendLSW are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.
What are the best alternatives to TrendLSW?
Top TrendLSW alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "TrendLSW alternatives" section above for the current picks, or visit /alternatives/trendlsw for the full list with editorial commentary on each.