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Comparison · Analytics
pedprobr vs timbr
A side-by-side editorial comparison of pedprobr and timbr — release velocity, themes, recent moves, and the top alternatives to consider.
pedprobr vs timbr: at a glance
What is pedprobr?
pedprobr is the likelihood engine, and it keeps finding ways to compute what it previously could not.
pedprobr computes pedigree likelihoods for the ped suite. Version 1.1.0 updated its loop handling to match pedtools 2.11.0, including founder and repeated loop breakers, and improved the peeling algorithm with single-child shortcuts and lower memory use. Version 1.0.0 was the other expansion: special lumping lets markers with mutation models that are un-lumpable in the Kemeny-Snell sense be lumped anyway in certain cases, with alleleLimit as a fallback for the rest.
What is timbr?
Three years dormant, timbr returns with dplyr verbs that finally respect tree structure
timbr provides a 'forest' class for nested tree data in R, letting users navigate parent/child relationships with tidyverse-style verbs. After its last release in May 2023, the package sat untouched for over three years before 0.3.0 landed in July 2026. That release is dominated by correctness work on the structural invariants that everything else depends on.
pedprobr vs timbr: editorial side-by-side
pedprobr
0.0ANALYTICS
pedprobr is the likelihood engine, and it keeps finding ways to compute what it previously could not.
◆ Current state
pedprobr computes pedigree likelihoods for the ped suite. Version 1.1.0 updated its loop handling to match pedtools 2.11.0, including founder and repeated loop breakers, and improved the peeling algorithm with single-child shortcuts and lower memory use. Version 1.0.0 was the other expansion: special lumping lets markers with mutation models that are un-lumpable in the Kemeny-Snell sense be lumped anyway in certain cases, with alleleLimit as a fallback for the rest.
◆ Where it's heading
Every significant release here removes a class of computation that used to be infeasible, either by making a marker lumpable or by making a loop breakable. The rest is steady peeling-algorithm optimization, which has been reducing memory footprint release after release since 0.9.2. The newly added .diagnostics option suggests the peeling internals are now complex enough that the maintainer needs to inspect them.
◆ Prediction
Since special lumping is documented as covering only some cases so far, expect further lumping situations to be implemented as pedmut adds them.
timbr
0.0ANALYTICS
Three years dormant, timbr returns with dplyr verbs that finally respect tree structure
◆ Current state
timbr provides a 'forest' class for nested tree data in R, letting users navigate parent/child relationships with tidyverse-style verbs. After its last release in May 2023, the package sat untouched for over three years before 0.3.0 landed in July 2026. That release is dominated by correctness work on the structural invariants that everything else depends on.
◆ Where it's heading
The arc is from a working prototype toward a class that behaves correctly under the full dplyr surface. 0.3.0 implements relocate(), rows_patch() and rows_update() for forests and makes select() always preserve the internal node column, closing the gaps where a standard verb would silently break the tree. The deprecation of map_forest() in favour of traverse(), begun in 0.2.2, is now complete.
◆ Prediction
With the verb coverage gaps closed and the long deprecation cycle finished, the next release is likely to extend dplyr method coverage further rather than change the forest model. The entries do not indicate what prompted the three-year gap, so the sustainability of this cadence is unclear.
Alternatives to pedprobr and timbr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either pedprobr or timbr.
spsurvey
spsurvey has spent four years consolidating after its 5.0.0 rewrite rather than adding to it
StreamCatTools
StreamCatTools is quietly moving off web services and onto cloud-native GeoParquet
reproducible
reproducible added a windowed read path so remote GeoTiffs never fully download
qcTAF
qcTAF is building an automated checklist for reproducible fisheries assessments, one criterion at a time
rpymat
After three dormant years, rpymat returned to fix the OpenMP crash that breaks R and conda together
See all pedprobr alternatives → · See all timbr alternatives →
Recent activity from pedprobr and timbr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agotimbrForests gain relocate/rows_patch/rows_update; map_forest now defunct
- 1mo agopedprobrLoop handling updated for pedtools' new loop breakers
- 1y agopedprobrCRAN example rounding fix
- 1y agopedprobrSpecial lumping for previously un-lumpable mutation models
- 1y agopedprobrGenotype distributions gain sparse and table output
- 2y agopedprobrPeeling order bug fix
- 2y agopedprobrPartial genotype fix for singletons
- 3y agotimbrmap_forest() renamed to traverse() and deprecated
- 3y agotimbrArgument rename in rowwise.forest() and CRAN check fixes
- 3y agotimbrForest headers now print the tree structure
Frequently asked questions
What is the difference between pedprobr and timbr?
They serve adjacent needs but don't currently overlap on shipped themes. pedprobr and timbr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is pedprobr better than timbr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. pedprobr and timbr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to pedprobr?
Top pedprobr alternatives in Analytics are ranked by recent ship velocity. Browse the "pedprobr alternatives" section above for the current picks, or visit /alternatives/pedprobr for the full list with editorial commentary on each.
What are the best alternatives to timbr?
Top timbr alternatives in Analytics are ranked by recent ship velocity. Browse the "timbr alternatives" section above for the current picks, or visit /alternatives/timbr for the full list with editorial commentary on each.