paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
n2khab vs treespace
A side-by-side editorial comparison of n2khab and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
n2khab vs treespace: at a glance
What is n2khab?
n2khab keeps retracting interpretations of habitat data it can't actually support
n2khab reads and prepares the standardised Flemish Natura 2000 habitat data sources — habitat maps, water surfaces, GRTS master grids — for reproducible analysis. Releases track the publication of new versioned data sources on Zenodo, but the more consequential ones change how the package interprets what it reads. The latest removes an argument outright after the reasoning behind it was found to be wrong.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
n2khab vs treespace: editorial side-by-side
n2khab
0.0ANALYTICS
n2khab keeps retracting interpretations of habitat data it can't actually support
◆ Current state
n2khab reads and prepares the standardised Flemish Natura 2000 habitat data sources — habitat maps, water surfaces, GRTS master grids — for reproducible analysis. Releases track the publication of new versioned data sources on Zenodo, but the more consequential ones change how the package interprets what it reads. The latest removes an argument outright after the reasoning behind it was found to be wrong.
◆ Where it's heading
Two forces shape the package. The first is external: each new habitatmap or watersurfaces vintage needs a supported reader, and the package has absorbed a steady stream of them. The second is a willingness to break its own API when the ecology does not support what the code claimed — the interpreted argument removed because type 3130 occurrences cannot be resolved to a single subtype, the rbbvos+ type dropped as too loosely defined, the collapse default changed to match how users actually need the output shaped. Return structures are also being normalised so element names no longer vary with data source version.
◆ Prediction
The package has said it expects future watersurfaces_hab versions to implement collapsing in the data source itself, so the corresponding argument is a candidate for removal once that lands — the same path the interpreted argument took.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to n2khab and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either n2khab or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all n2khab alternatives → · See all treespace alternatives →
Recent activity from n2khab and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agon2khabn2khab 0.15.1
- 1mo agon2khabn2khab drops an argument built on a wrong ecological assumption
- 5mo agon2khabn2khab adds a reader for the watersurfaces reference points source
- 7mo agon2khabn2khab collapses watersurfaces output to unique polygon-type pairs
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 1y agon2khabSupport for watersurfaces 2024 and watersurfaces_hab v6
- 1y agon2khabn2khab supports the 2023 habitat maps and drops the rbbvos+ type
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between n2khab and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. n2khab and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is n2khab better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. n2khab and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to n2khab?
Top n2khab alternatives in Analytics are ranked by recent ship velocity. Browse the "n2khab alternatives" section above for the current picks, or visit /alternatives/n2khab for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.