simlandr
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
Comparison · Analytics
mmconvert vs vinereg
A side-by-side editorial comparison of mmconvert and vinereg — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
mmconvert vs vinereg: at a glance
What is mmconvert?
A single-purpose mouse map interpolator that solved its problem in 2023 and has coasted since
mmconvert does one thing: interpolate between GRCm39 physical positions and the revised Cox genetic map for mouse MUGA array markers. The substantive work all landed in a burst across 2021-2023 — the initial function, the GRCm39 annotation dataset, cross2_to_grcm39(), the recomputed Cox maps and their smoothed replacement. Everything since is upkeep: a warning-message fix in 0.12, and 0.14 is a test adjustment to silence a CRAN Note with no code change at all.
What is vinereg?
Conditional density and log-likelihood fill out a vine copula regression package.
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
mmconvert vs vinereg: editorial side-by-side
mmconvert
0.0ANALYTICS
A single-purpose mouse map interpolator that solved its problem in 2023 and has coasted since
◆ Current state
mmconvert does one thing: interpolate between GRCm39 physical positions and the revised Cox genetic map for mouse MUGA array markers. The substantive work all landed in a burst across 2021-2023 — the initial function, the GRCm39 annotation dataset, cross2_to_grcm39(), the recomputed Cox maps and their smoothed replacement. Everything since is upkeep: a warning-message fix in 0.12, and 0.14 is a test adjustment to silence a CRAN Note with no code change at all.
◆ Where it's heading
The package has reached the natural end state of a reference-data converter — the reference data stopped moving, so the package stopped moving. Releases now arrive roughly annually and exist to keep CRAN checks green. The 0.14 release shipped the same day as sibling qtl2convert 0.36, confirming these are batch maintenance passes across the maintainer's packages rather than independent development.
◆ Prediction
Without a new mouse genome build or a revised Cox map, the next release is likely another CRAN-check accommodation rather than new functionality.
vinereg
0.0ANALYTICS
Conditional density and log-likelihood fill out a vine copula regression package.
◆ Current state
vinereg fits D-vine copula-based regression models on top of rvinecopulib and kde1d, in Thomas Nagler's package stack. The January 2025 pair - 0.10.0 and 0.11.0 tagged the same day - adds a pdf() function and then fixes conditional density computation for discrete variables while requiring the newer kde1d. Release notes run to one or two bullets each.
◆ Where it's heading
Work has concentrated on evaluation rather than fitting: cll() in 0.9.0, pdf() in 0.10.0, and the discrete-variable correction in 0.11.0 all concern what can be computed from a model already fitted. Releases arrive in same-day pairs, and the notes are terse enough that 0.10.0 reuses 0.9.0's wording verbatim, describing pdf() with cll()'s sentence. Version floors also track the sibling packages - kde1d here, rvinecopulib in 0.8.3.
◆ Prediction
Given the shared release rhythm across the stack, the next entry is as likely to be a dependency-driven bump as a new function; the discrete-variable path is the one area these notes show as recently unstable.
Alternatives to mmconvert and vinereg
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either mmconvert or vinereg.
lavaanExtra
SEM reporting helpers converging on APA output, one CRAN resubmission at a time.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
healthyR.data
From a bundled hospital dataset to a live CMS API client.
See all mmconvert alternatives → · See all vinereg alternatives →
Recent activity from mmconvert and vinereg
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agommconvertTest adjustment to clear a CRAN Note
- 1y agommconvertFixes a malformed warning message in mmconvert()
- 1y agovineregDiscrete conditional densities fixed; kde1d 1.1.0 required
- 1y agovineregpdf() added for conditional density
- 2y agovineregBoost compile flag and a weights error fixed
- 2y agovineregcll() computes conditional log-likelihood
- 3y agommconvertOmits X chromosome positions for sex-averaged and male maps
- 3y agommconvertCRAN release adds chromosome lengths and smoothed Cox maps
- 3y agommconvertRecomputed Cox genetic maps and combined-array support
- 4y agovineregvinecopulib floor raised for RcppThread compatibility
- 4y agovineregcpit() fixed and external marginals allowed via uscale
- 4y agommconvertRepoints data sources from master to main branches
Frequently asked questions
What is the difference between mmconvert and vinereg?
Both compete on the same themes — r-package — within Analytics. mmconvert and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is mmconvert better than vinereg?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. mmconvert and vinereg are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to mmconvert?
Top mmconvert alternatives in Analytics are ranked by recent ship velocity. Browse the "mmconvert alternatives" section above for the current picks, or visit /alternatives/mmconvert for the full list with editorial commentary on each.
What are the best alternatives to vinereg?
Top vinereg alternatives in Analytics are ranked by recent ship velocity. Browse the "vinereg alternatives" section above for the current picks, or visit /alternatives/vinereg for the full list with editorial commentary on each.