mrbayes
mrbayes spent 2026 auditing its own Bayesian MR estimators for coding errors.
Comparison · Analytics
kernelshap vs trias
A side-by-side editorial comparison of kernelshap and trias — release velocity, themes, recent moves, and the top alternatives to consider.
kernelshap vs trias: at a glance
What is kernelshap?
kernelshap makes permutation SHAP practical past eight features, then fixes the kernel weights it had wrong.
kernelshap computes model-agnostic SHAP values in R through Kernel SHAP, permutation SHAP and an exact additive explainer. Version 0.8.0 added a sampling permutation-SHAP algorithm with standard errors and early stopping, lifting the practical feature ceiling past what the exact method allows. Version 0.9.0 then corrected a bug in how kernel weights were computed — exact Kernel SHAP now agrees with exact permutation SHAP — and moved parallelism from foreach to doFuture.
What is trias?
Belgium's invasive-species indicator toolkit is in steady refinement, one plotting edge case at a time.
trias computes and visualizes indicators for the Belgian Tracking Invasive Alien Species project — emergence detection via GAMs, introduction pathway breakdowns following CBD categories, and native range trends. The recent releases are narrow: GAM plots can now be produced without textual annotation when the model cannot be fitted, and apply_decision_rules() no longer supplies a default for a required argument.
kernelshap vs trias: editorial side-by-side
kernelshap
0.0ANALYTICS
kernelshap makes permutation SHAP practical past eight features, then fixes the kernel weights it had wrong.
◆ Current state
kernelshap computes model-agnostic SHAP values in R through Kernel SHAP, permutation SHAP and an exact additive explainer. Version 0.8.0 added a sampling permutation-SHAP algorithm with standard errors and early stopping, lifting the practical feature ceiling past what the exact method allows. Version 0.9.0 then corrected a bug in how kernel weights were computed — exact Kernel SHAP now agrees with exact permutation SHAP — and moved parallelism from foreach to doFuture.
◆ Where it's heading
Two concerns drive this package: making exact methods reach further, and being demonstrably right. The first shows in the additive explainer, the optional background dataset and the sampling permutation algorithm; the second in unit tests written against Python's shap, credited fixes from outside contributors, and a willingness to ship a correctness fix that changes numbers people have already published. Speed work runs continuously underneath — direct solves replacing the Moore-Penrose pseudo-inverse, roughly 10% less memory.
◆ Prediction
The 0.6.0 and 0.7.0 notes each promised a stable 1.0.0 that has not arrived; with the weighting bug fixed and parallelism reworked, a 1.0 release is the most plausible next step.
trias
0.0ANALYTICS
Belgium's invasive-species indicator toolkit is in steady refinement, one plotting edge case at a time.
◆ Current state
trias computes and visualizes indicators for the Belgian Tracking Invasive Alien Species project — emergence detection via GAMs, introduction pathway breakdowns following CBD categories, and native range trends. The recent releases are narrow: GAM plots can now be produced without textual annotation when the model cannot be fitted, and apply_decision_rules() no longer supplies a default for a required argument.
◆ Where it's heading
Development runs in small, fast patches concentrated on making the indicator functions survive imperfect real-world input — pathways absent from the data, GAMs that will not converge, checklist files with unexpected columns. A second thread trims the package's own surface in favor of the data it ships, deprecating pathways_cbd() in favor of using the pathwayscbd data frame directly, while get_nubkeys() extends reach into GBIF Backbone taxon key resolution.
◆ Prediction
Expect continued patch-level hardening of the visualization functions and further reliance on GBIF services for taxon resolution, with no sign of a structural change to the indicator set.
Alternatives to kernelshap and trias
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either kernelshap or trias.
lineup2
lineup2 ships once every few years, and 2026's release is a logo and a core-count tweak.
stringi
stringi has spent two years on build hardening since its Unicode 15.1 reset.
OHPL
A 2017 chemometrics method frozen in place, visited only when CRAN changes its documentation rules.
fastplyr
A fast dplyr stand-in that keeps finding new places to skip work entirely.
icesSAG
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
See all kernelshap alternatives → · See all trias alternatives →
Recent activity from kernelshap and trias
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agotriasGAM plots survive models that cannot be fitted
- 5mo agotriasColumn validation added to the download list update
- 6mo agotriasY-axis tick values corrected in pathway plots
- 6mo agotriasZenodo integration patch removes the DOI badge
- 6mo agotriasget_nubkeys() resolves GBIF Backbone taxon keys
- 6mo agotriaspathways_cbd() deprecated in favor of its data frame
- 1y agokernelshapKernel weight bug fixed; parallelism moves to doFuture
- 1y agokernelshapSampling permutation SHAP with standard errors ⚡
- 1y agokernelshapBackground data now optional; ranger survival support
- 2y agokernelshapFactor-valued predictions dropped
- 2y agokernelshapadditive_shap() explains additive models exactly
- 2y agokernelshapFaster on plain data.frames
Frequently asked questions
What is the difference between kernelshap and trias?
They serve adjacent needs but don't currently overlap on shipped themes. kernelshap and trias are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is kernelshap better than trias?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. kernelshap and trias are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to kernelshap?
Top kernelshap alternatives in Analytics are ranked by recent ship velocity. Browse the "kernelshap alternatives" section above for the current picks, or visit /alternatives/kernelshap for the full list with editorial commentary on each.
What are the best alternatives to trias?
Top trias alternatives in Analytics are ranked by recent ship velocity. Browse the "trias alternatives" section above for the current picks, or visit /alternatives/trias-r for the full list with editorial commentary on each.