tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
kernelshap vs paleobuddy
A side-by-side editorial comparison of kernelshap and paleobuddy — release velocity, themes, recent moves, and the top alternatives to consider.
kernelshap vs paleobuddy: at a glance
What is kernelshap?
kernelshap makes permutation SHAP practical past eight features, then fixes the kernel weights it had wrong.
kernelshap computes model-agnostic SHAP values in R through Kernel SHAP, permutation SHAP and an exact additive explainer. Version 0.8.0 added a sampling permutation-SHAP algorithm with standard errors and early stopping, lifting the practical feature ceiling past what the exact method allows. Version 0.9.0 then corrected a bug in how kernel weights were computed — exact Kernel SHAP now agrees with exact permutation SHAP — and moved parallelism from foreach to doFuture.
What is paleobuddy?
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
kernelshap vs paleobuddy: editorial side-by-side
kernelshap
0.0ANALYTICS
kernelshap makes permutation SHAP practical past eight features, then fixes the kernel weights it had wrong.
◆ Current state
kernelshap computes model-agnostic SHAP values in R through Kernel SHAP, permutation SHAP and an exact additive explainer. Version 0.8.0 added a sampling permutation-SHAP algorithm with standard errors and early stopping, lifting the practical feature ceiling past what the exact method allows. Version 0.9.0 then corrected a bug in how kernel weights were computed — exact Kernel SHAP now agrees with exact permutation SHAP — and moved parallelism from foreach to doFuture.
◆ Where it's heading
Two concerns drive this package: making exact methods reach further, and being demonstrably right. The first shows in the additive explainer, the optional background dataset and the sampling permutation algorithm; the second in unit tests written against Python's shap, credited fixes from outside contributors, and a willingness to ship a correctness fix that changes numbers people have already published. Speed work runs continuously underneath — direct solves replacing the Moore-Penrose pseudo-inverse, roughly 10% less memory.
◆ Prediction
The 0.6.0 and 0.7.0 notes each promised a stable 1.0.0 that has not arrived; with the weighting bug fixed and parallelism reworked, a 1.0 release is the most plausible next step.
paleobuddy
0.0ANALYTICS
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
◆ Current state
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
◆ Where it's heading
Releases track the maintainer's publications rather than a product cadence — 1.0.0 accompanied the MEE manuscript, 1.0.0.1 exists purely as a Zenodo citation anchor, and 1.1.0 is stated as going with a paper on SSE model accuracy for trees including fossil data. That framing sets the direction: the package grows whichever capability the next study needs to test. The stated SSE limits, no quantitative traits and no cladogenetic transitions, mark exactly where that boundary currently sits.
◆ Prediction
Quantitative traits and cladogenetic transitions are named as missing, which makes them the obvious next targets, though on this history the timing will follow a paper rather than a roadmap.
Alternatives to kernelshap and paleobuddy
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either kernelshap or paleobuddy.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all kernelshap alternatives → · See all paleobuddy alternatives →
Recent activity from kernelshap and paleobuddy
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agokernelshapKernel weight bug fixed; parallelism moves to doFuture
- 1y agokernelshapSampling permutation SHAP with standard errors ⚡
- 1y agopaleobuddypaleobuddy 1.1.0 adds SSE trait-dependent simulation ⚡
- 1y agokernelshapBackground data now optional; ranger survival support
- 2y agokernelshapFactor-valued predictions dropped
- 2y agokernelshapadditive_shap() explains additive models exactly
- 2y agokernelshapFaster on plain data.frames
- 3y agopaleobuddypaleobuddy 1.0.0.1: Zenodo citation release
- 4y agopaleobuddypaleobuddy 1.0.0: first release with time-varying rates
Frequently asked questions
What is the difference between kernelshap and paleobuddy?
They serve adjacent needs but don't currently overlap on shipped themes. kernelshap and paleobuddy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is kernelshap better than paleobuddy?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. kernelshap and paleobuddy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to kernelshap?
Top kernelshap alternatives in Analytics are ranked by recent ship velocity. Browse the "kernelshap alternatives" section above for the current picks, or visit /alternatives/kernelshap for the full list with editorial commentary on each.
What are the best alternatives to paleobuddy?
Top paleobuddy alternatives in Analytics are ranked by recent ship velocity. Browse the "paleobuddy alternatives" section above for the current picks, or visit /alternatives/paleobuddy for the full list with editorial commentary on each.