simlandr
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
Comparison · Analytics
kde1d vs STACAS
A side-by-side editorial comparison of kde1d and STACAS — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
kde1d vs STACAS: at a glance
What is kde1d?
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
kde1d estimates univariate densities with local polynomial kernel methods, handling bounded, discrete and now zero-inflated variables through a single type argument, with the numerical work in a header-only C++ library usable outside R. Version 1.1.0 added the zero-inflated discrete-continuous mixture case and shipped a new C++ API as an explicit breaking change; 1.1.1 followed in June with auto-generated notes and no description.
What is STACAS?
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
STACAS integrates single-cell RNA-seq datasets by finding and weighting anchors between them, with rPCA-distance-based downweighting and an optional semi-supervised mode that uses cell type labels to discard inconsistent anchors. IntegrateData.STACAS() performs the integration natively rather than handing off, and StandardizeGeneSymbols() normalises gene naming across datasets before anchors are computed.
kde1d vs STACAS: editorial side-by-side
kde1d
0.0ANALYTICS
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
◆ Current state
kde1d estimates univariate densities with local polynomial kernel methods, handling bounded, discrete and now zero-inflated variables through a single type argument, with the numerical work in a header-only C++ library usable outside R. Version 1.1.0 added the zero-inflated discrete-continuous mixture case and shipped a new C++ API as an explicit breaking change; 1.1.1 followed in June with auto-generated notes and no description.
◆ Where it's heading
The package has alternated between performance work and widening the class of data it accepts. The 1.0.0 release was the performance milestone — FFT-based estimation, a better integration algorithm for the p, q and r functions, deterministic jittering replacing randomness, and standalone C++ headers. The 1.1.0 release is the scope milestone, adding a third data type to the two it already handled. Releases come from the same maintainer as svines and cluster on shared dates, so changes in the underlying C++ surface across the vine and density stack tend to ship together.
◆ Prediction
With the C++ API deliberately reworked for standalone use at 1.1.0, further work most plausibly consolidates that interface rather than adding data types. What 1.1.1 actually changed is not readable from its body.
STACAS
0.0ANALYTICS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
◆ Current state
STACAS integrates single-cell RNA-seq datasets by finding and weighting anchors between them, with rPCA-distance-based downweighting and an optional semi-supervised mode that uses cell type labels to discard inconsistent anchors. IntegrateData.STACAS() performs the integration natively rather than handing off, and StandardizeGeneSymbols() normalises gene naming across datasets before anchors are computed.
◆ Where it's heading
The method work concentrated in version 2.0 and has been stable since; everything after is Seurat compatibility and operational robustness. Versions 2.1.1 through 2.3.0 track Seurat v5 assays, v3-to-v5 conversion, multi-layer objects and SCT normalisation, with the genuinely useful additions — a reference seed dataset, max.seed.datasets for large-scale integration, min.sample.size — arriving as side effects of that work. The package is from the same lab as GeneNMF, and its release rhythm follows the single-cell ecosystem's upstream churn rather than an internal roadmap.
◆ Prediction
Expect the next release to follow further Seurat object-model changes, which have driven the last three. Nothing in the entries indicates new anchor-scoring or correction methodology in progress.
Alternatives to kde1d and STACAS
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either kde1d or STACAS.
lavaanExtra
SEM reporting helpers converging on APA output, one CRAN resubmission at a time.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
vinereg
Conditional density and log-likelihood fill out a vine copula regression package.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
See all kde1d alternatives → · See all STACAS alternatives →
Recent activity from kde1d and STACAS
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agokde1dkde1d 1.1.1
- 1y agoSTACASMulti-layer objects and Seurat v3-to-v5 conversion handled
- 1y agokde1dZero-inflated mixtures and a new standalone C++ API ⚡
- 2y agoSTACASscale.data option for extreme batch effects; gene name conversion table
- 3y agoSTACASReference seeding, gene symbol standardisation, large-scale integration path
- 4y agoSTACASSemi-supervised integration and rPCA anchor downweighting ⚡
- 4y agokde1dBit-wise Boolean operations removed
- 5y agoSTACASSeurat 4.0.0 compatibility and SCTransform support
- 5y agokde1ddkde1d() invisible output fixed
- 5y agokde1dValgrind false positive silenced
- 6y agokde1dqrng dependency dropped; undefined behaviour fixed
Frequently asked questions
What is the difference between kde1d and STACAS?
Both compete on the same themes — r-package — within Analytics. kde1d and STACAS are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is kde1d better than STACAS?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. kde1d and STACAS are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to kde1d?
Top kde1d alternatives in Analytics are ranked by recent ship velocity. Browse the "kde1d alternatives" section above for the current picks, or visit /alternatives/kde1d for the full list with editorial commentary on each.
What are the best alternatives to STACAS?
Top STACAS alternatives in Analytics are ranked by recent ship velocity. Browse the "STACAS alternatives" section above for the current picks, or visit /alternatives/stacas for the full list with editorial commentary on each.