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Comparison · Infra & APIs
jstable vs phyloatlas
A side-by-side editorial comparison of jstable and phyloatlas — release velocity, themes, recent moves, and the top alternatives to consider.
jstable vs phyloatlas: at a glance
What is jstable?
A clinical table generator paying down years of edge cases in survey-weighted models
jstable turns regression and survival models into the formatted tables medical papers publish, wrapping coxph, glm, geeglm, lmer and their survey-weighted counterparts. The recent line is almost entirely correction work, concentrated in two places: the .display family and the TableSubgroup family. Version 1.3.25 alone fixed quasibinomial support for survey-weighted logistic regression, automatic factor-to-numeric outcome conversion for svyglm, weighted-versus-original sample counts in the n row, data.table input handling, and Overall column labelling.
What is phyloatlas?
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
This is a curated deposit of species-level phylogenies — 264 trees across 62 partitions, 247 of them time-calibrated — paired with a species-name dictionary of roughly 638,000 standardized labels and per-tree provenance. It is moving through peer review at Methods in Ecology and Evolution, and the release stream is essentially a public erratum log: eight releases in five weeks, each reconciling the deposit against source papers, the manuscript, and its own metadata. The most recent replaced the turtle canonical with a 274-tip ultrametric chronogram after the previous tree failed time-calibration integrity checks.
jstable vs phyloatlas: editorial side-by-side
jstable
0.0INFRA · APIS
A clinical table generator paying down years of edge cases in survey-weighted models
◆ Current state
jstable turns regression and survival models into the formatted tables medical papers publish, wrapping coxph, glm, geeglm, lmer and their survey-weighted counterparts. The recent line is almost entirely correction work, concentrated in two places: the .display family and the TableSubgroup family. Version 1.3.25 alone fixed quasibinomial support for survey-weighted logistic regression, automatic factor-to-numeric outcome conversion for svyglm, weighted-versus-original sample counts in the n row, data.table input handling, and Overall column labelling.
◆ Where it's heading
Each CRAN release bundles several GitHub patch versions, so the notes read as rolled-up fix lists rather than feature announcements. The substantive thread is pcut.univariate, introduced across seven display functions in 1.3.11 to allow multivariable analysis restricted to significant variables, and repaired repeatedly since as it collided with interaction terms, single-variable selections, clustered models and data.table inputs. The survey-weighted path is the other recurring source: counts, labels and family handling that worked for unweighted data kept failing once weights were involved.
◆ Prediction
Expect further patches in the survey-weighted subgroup functions, since 1.3.25 fixed four separate issues there and each recent release has surfaced more in the same area.
phyloatlas
0.0INFRA · APIS
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
◆ Current state
This is a curated deposit of species-level phylogenies — 264 trees across 62 partitions, 247 of them time-calibrated — paired with a species-name dictionary of roughly 638,000 standardized labels and per-tree provenance. It is moving through peer review at Methods in Ecology and Evolution, and the release stream is essentially a public erratum log: eight releases in five weeks, each reconciling the deposit against source papers, the manuscript, and its own metadata. The most recent replaced the turtle canonical with a 274-tip ultrametric chronogram after the previous tree failed time-calibration integrity checks.
◆ Where it's heading
The project's defining decision is that it archives the recipe rather than the corpus. Since 1.0.3 the Zenodo deposit holds metadata, provenance, and standardization code while the tree files live at their original sources, and the same principle was applied again when the TimeTree-of-Life was removed at the TimeTree project's request and reduced to a citation. What makes the correction log unusual is its direction: partitions keep getting reclassified from dated to undated as verification confirms the source papers described chronograms they never deposited. The atlas is being built to be honest about archival uncertainty rather than to maximize coverage.
◆ Prediction
The release cadence is driven by the manuscript review cycle, so expect corrections to continue until MEE acceptance and then slow sharply; the open thread most likely to produce the next one is the remaining recoverable archival uncertainty flagged across non-Condamine dated source trees.
Alternatives to jstable and phyloatlas
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either jstable or phyloatlas.
forestploter
A forest plot package that keeps handing users control of one more graphical detail.
ggInterval
Interval-valued data plotting, spending 2026 making its function names and examples survive CRAN.
rgm
A microbiome network model that got itself un-archived by deleting the dependency that killed it.
contagionchannels
Three releases in ten days, every one of them a CRAN reviewer's correction rather than a code change.
tidyaudit
Pipeline provenance for tidyverse workflows, recording what changed at each step without keeping the data.
See all jstable alternatives → · See all phyloatlas alternatives →
Recent activity from jstable and phyloatlas
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agophyloatlasv1.0.8 — turtle chronogram canonical; MEE integrity pass
- 1mo agophyloatlasv1.0.7 — restore species-name dictionary
- 1mo agophyloatlasv1.0.6 — data-integrity corrections + TimeTree de-redistribution
- 2mo agophyloatlasv1.0.5 — consistency corrections
- 2mo agophyloatlasv1.0.4 — data corrections + canonical succession (Supplementary Table S7)
- 2mo agophyloatlasv1.0.3 — title alignment, LICENSE, three-category framework, sensitivity bounds ⚡
- 4mo agojstableSurvey-weighted logistic regression and sample counts corrected
- 6mo agojstableCompeting-risk counts drawn from original rather than transformed data
- 9mo agojstableMulti-state Cox models detected without a manual flag
- 10mo agojstableWide fix pass across the display functions
- 1y agojstableCrude p-values computed from raw data via data_for_univariate
- 1y agojstableSignificance-filtered multivariable analysis added across seven functions
Frequently asked questions
What is the difference between jstable and phyloatlas?
They serve adjacent needs but don't currently overlap on shipped themes. jstable and phyloatlas are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is jstable better than phyloatlas?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. jstable and phyloatlas are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to jstable?
Top jstable alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jstable alternatives" section above for the current picks, or visit /alternatives/jstable for the full list with editorial commentary on each.
What are the best alternatives to phyloatlas?
Top phyloatlas alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "phyloatlas alternatives" section above for the current picks, or visit /alternatives/phylo-species-atlas for the full list with editorial commentary on each.