pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
jSDM vs surveytidy
A side-by-side editorial comparison of jSDM and surveytidy — release velocity, themes, recent moves, and the top alternatives to consider.
jSDM vs surveytidy: at a glance
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
What is surveytidy?
surveytidy taught every dplyr verb to operate on a whole collection of surveys at once.
surveytidy is the tidyverse-facing half of a two-package survey stack, wrapping survey design objects from surveycore so filter, mutate, select and the rest work on them while carrying variable labels, value labels and a transformation log alongside the data. The May release extended that verb surface to survey_collection, the abstraction surveycore uses to hold several surveys as one object, so a pipeline written once dispatches across every member.
jSDM vs surveytidy: editorial side-by-side
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
surveytidy
0.0INFRA · APIS
surveytidy taught every dplyr verb to operate on a whole collection of surveys at once.
◆ Current state
surveytidy is the tidyverse-facing half of a two-package survey stack, wrapping survey design objects from surveycore so filter, mutate, select and the rest work on them while carrying variable labels, value labels and a transformation log alongside the data. The May release extended that verb surface to survey_collection, the abstraction surveycore uses to hold several surveys as one object, so a pipeline written once dispatches across every member.
◆ Where it's heading
The package is being built in two layers that arrive in order: vector-level transformations first, structural dispatch second. The make_* family in 0.4.0 handles the recoding that survey work actually consists of — labelled to factor, multi-level to dichotomous, scale reversal, valence flipping — with value labels propagating automatically. Collection support then applies data-masking, tidyselect, grouping, slicing and collapsing verbs per survey, with joins explicitly refused and a typed message reporting which surveys were skipped. Metadata fidelity is the recurring bug source: labels surviving across(), stale labels left behind by recoding, the transformation log keeping up with what the verbs did.
◆ Prediction
Joins are the one verb family that errors on collections, with users directed to join before constructing the collection, so that restriction is the clearest outstanding gap. The re-export of surveycore's collection constructors suggests the package is positioning itself as the single import users need, which points toward more re-exports as surveycore's stable API settles.
Alternatives to jSDM and surveytidy
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either jSDM or surveytidy.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all jSDM alternatives → · See all surveytidy alternatives →
Recent activity from jSDM and surveytidy
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agosurveytidymutate() syncs metadata for across() recodes
- 3mo agosurveytidydplyr and tidyr verbs dispatch across survey collections
- 5mo agosurveytidyFive label-aware recoding functions for use inside mutate()
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
Frequently asked questions
What is the difference between jSDM and surveytidy?
They serve adjacent needs but don't currently overlap on shipped themes. jSDM and surveytidy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is jSDM better than surveytidy?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. jSDM and surveytidy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.
What are the best alternatives to surveytidy?
Top surveytidy alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "surveytidy alternatives" section above for the current picks, or visit /alternatives/surveytidy for the full list with editorial commentary on each.