pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
jSDM vs microViz
A side-by-side editorial comparison of jSDM and microViz — release velocity, themes, recent moves, and the top alternatives to consider.
jSDM vs microViz: at a glance
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
What is microViz?
Microbiome ordination and visualisation, in maintenance and keeping pace with vegan and ggplot2.
microViz provides visualisation and statistics for microbiome data built on phyloseq, including ordination exploration, distance-based dispersion analysis and composition plots. The release notes are pointer-style entries that name a pull request and link a comparison range rather than describing what changed, so most of what can be established from this feed is cadence and dependency pressure rather than substance. Version 0.13.1 is the exception, naming documentation work on dist_bdisp and its defaults relative to vegan's betadisper.
jSDM vs microViz: editorial side-by-side
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
microViz
0.0INFRA · APIS
Microbiome ordination and visualisation, in maintenance and keeping pace with vegan and ggplot2.
◆ Current state
microViz provides visualisation and statistics for microbiome data built on phyloseq, including ordination exploration, distance-based dispersion analysis and composition plots. The release notes are pointer-style entries that name a pull request and link a comparison range rather than describing what changed, so most of what can be established from this feed is cadence and dependency pressure rather than substance. Version 0.13.1 is the exception, naming documentation work on dist_bdisp and its defaults relative to vegan's betadisper.
◆ Where it's heading
Read through the dependency mentions, the pattern is a package spending its releases absorbing changes in the ecosystem beneath it: vegan deprecating summary in favour of scores, cowplot warning under ggplot2 3.5, testthat declarations centralised, CI actions updated. Nothing in the window indicates new analytical capability, and the 0.13.0 minor bump that would be the place to look for it ships with no notes at all. The honest reading is a stable package under maintenance by a single maintainer.
◆ Prediction
Expect continued upkeep against phyloseq, vegan and ggplot2 changes rather than a feature programme. Because the notes do not describe their own contents, a substantive release here would be indistinguishable from a maintenance one in this feed, so the direction cannot be read from these entries alone.
Alternatives to jSDM and microViz
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either jSDM or microViz.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all jSDM alternatives → · See all microViz alternatives →
Recent activity from jSDM and microViz
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agomicroVizmicroViz 0.13.1
- 6mo agomicroVizmicroViz 0.13.0
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 1y agomicroVizmicroViz 0.12.7
- 1y agomicroVizmicroViz 0.12.6
- 1y agomicroVizmicroViz 0.12.5
- 2y agomicroVizmicroViz 0.12.4
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
Frequently asked questions
What is the difference between jSDM and microViz?
They serve adjacent needs but don't currently overlap on shipped themes. jSDM and microViz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is jSDM better than microViz?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. jSDM and microViz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.
What are the best alternatives to microViz?
Top microViz alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "microViz alternatives" section above for the current picks, or visit /alternatives/microviz for the full list with editorial commentary on each.