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The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
JointFPM vs mdatools
A side-by-side editorial comparison of JointFPM and mdatools — release velocity, themes, recent moves, and the top alternatives to consider.
JointFPM vs mdatools: at a glance
What is JointFPM?
Recurrent-event modelling settles, with mean_no() promoted to stable.
JointFPM fits joint flexible parametric models for a recurrent event process alongside a competing terminal event, and predicts the mean number of events. The visible history runs from bug fixes on the earliest CRAN releases through standardization, integration options and a summary method, ending with mean_no() declared stable. Several changes arrived through outside pull requests.
What is mdatools?
mdatools spun out its cross-validation method, then came back for three-way data.
mdatools is a long-running chemometrics package covering PCA, PLS regression, SIMCA and DD-SIMCA classification, MCR resolution and a large spectral preprocessing framework. Its releases are infrequent and each one tends to carry one substantive idea plus a handful of fixes. The June release opens a direction the package had not previously taken: DD-SIMCA classification of three-way data, through PARAFAC and Tucker decompositions.
JointFPM vs mdatools: editorial side-by-side
JointFPM
0.0INFRA · APIS
Recurrent-event modelling settles, with mean_no() promoted to stable.
◆ Current state
JointFPM fits joint flexible parametric models for a recurrent event process alongside a competing terminal event, and predicts the mean number of events. The visible history runs from bug fixes on the earliest CRAN releases through standardization, integration options and a summary method, ending with mean_no() declared stable. Several changes arrived through outside pull requests.
◆ Where it's heading
The arc runs from a working estimator toward a usable one: input validation and error messages first, then control over the numerical integration, then a summary method and pass-through arguments to the underlying rstpm2 fit. The latest release adds no code so much as a stability commitment to a function users were already calling.
◆ Prediction
With mean_no() stable, the next work most likely targets the prediction and standardization paths rather than the model fit itself.
mdatools
0.0INFRA · APIS
mdatools spun out its cross-validation method, then came back for three-way data.
◆ Current state
mdatools is a long-running chemometrics package covering PCA, PLS regression, SIMCA and DD-SIMCA classification, MCR resolution and a large spectral preprocessing framework. Its releases are infrequent and each one tends to carry one substantive idea plus a handful of fixes. The June release opens a direction the package had not previously taken: DD-SIMCA classification of three-way data, through PARAFAC and Tucker decompositions.
◆ Where it's heading
The shape of the package has been managed deliberately rather than allowed to sprawl. Procrustes cross-validation grew large enough to warrant its own package and was moved out to pcv in 0.14.0; preprocessing was consolidated in 0.12.0 into a composable prep() framework rather than a set of loose functions. Around that, the recurring work is numerical: a more stable SIMPLS implementation, cross-validation rewritten to accept user-supplied segment indices, prep.savgol() and prep.alsbasecorr() rewritten for speed, and now the baseline iteration default raised to match the web applications the maintainer also runs.
◆ Prediction
Three-way DD-SIMCA arrives with two decompositions and no companion regression or resolution methods for multiway data, so extending the multiway path to the rest of the toolkit is the obvious follow-up. The alignment of defaults with the maintainer's web applications suggests those two codebases will keep being reconciled.
Alternatives to JointFPM and mdatools
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either JointFPM or mdatools.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
See all JointFPM alternatives → · See all mdatools alternatives →
Recent activity from JointFPM and mdatools
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agomdatoolsDD-SIMCA classification arrives for three-way data ⚡
- 5mo agomdatoolsv. 0.15.0
- 1y agoJointFPMmean_no() promoted to a stable interface
- 2y agomdatoolsData frames converted to matrices automatically for model training
- 2y agoJointFPMsummary() method and control arguments passed to rstpm2
- 2y agoJointFPMGaussian quadrature option for the mean-events integration
- 2y agoJointFPMStandardized marginal estimates plus input validation
- 2y agoJointFPMBug fixes for differences between mean-event functions
- 3y agomdatoolscv.scope lets centering and scaling follow the global or local set
- 3y agomdatoolsProcrustes cross-validation moves out to its own pcv package ⚡
- 3y agomdatoolsgetRegcoeffs() fixed for unscaled models; ipls() gains a full mode
Frequently asked questions
What is the difference between JointFPM and mdatools?
They serve adjacent needs but don't currently overlap on shipped themes. JointFPM and mdatools are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is JointFPM better than mdatools?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. JointFPM and mdatools are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to JointFPM?
Top JointFPM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "JointFPM alternatives" section above for the current picks, or visit /alternatives/jointfpm for the full list with editorial commentary on each.
What are the best alternatives to mdatools?
Top mdatools alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "mdatools alternatives" section above for the current picks, or visit /alternatives/mdatools for the full list with editorial commentary on each.