paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
A side-by-side editorial comparison of hdnom and parallelDist — release velocity, themes, recent moves, and the top alternatives to consider.
hdnom is in pure custodial mode, absorbing glmnet's changes so its users don't have to
hdnom builds nomograms and validation/calibration workflows for high-dimensional Cox survival models on top of glmnet, ncvreg and penalized. The package's own interface has been stable since the 6.0.0 refactor in 2019; every release since has been maintenance. The recent run is entirely about surviving glmnet's evolution — a lambda-selection rule argument, then a cox.ties argument pinning the old tie handling.
parallelDist is in pure preservation mode — one build fix every few years.
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
hdnom builds nomograms and validation/calibration workflows for high-dimensional Cox survival models on top of glmnet, ncvreg and penalized. The package's own interface has been stable since the 6.0.0 refactor in 2019; every release since has been maintenance. The recent run is entirely about surviving glmnet's evolution — a lambda-selection rule argument, then a cox.ties argument pinning the old tie handling.
The releases track two upstream pressures with no feature work of its own. glmnet is the larger one: its 4.1-9 change to how Cox cross-validation errors are normalized made lambda.1se select null models far more often, forcing hdnom to expose a rule argument and switch its examples to lambda.min. R-devel is the other, producing a steady trickle of strict-headers, deprecated-symbol and check-note fixes. The pattern is consistent — absorb the upstream change, default to whatever preserves existing behaviour, let users opt into the new one.
The cox.ties default is explicitly pinned to "breslow" to silence glmnet's migration warning, which is a deferral rather than a decision; expect a future release to flip that default to "efron" once glmnet completes the transition.
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
The package is being kept installable, not developed. The three most recent releases are a toolchain pin removal, a DESCRIPTION field removal, and a coercion change inherited from proxy — none originate from user-facing intent. Gaps of three to four years between releases are the norm now, and each one is triggered by something upstream breaking rather than by a roadmap.
The next release will almost certainly be another compatibility fix timed to whatever Armadillo, Rcpp or CRAN check policy changes next. Nothing in the entries points to new distance measures or API work.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either hdnom or parallelDist.
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors keeps making uncertainty print the way each scientific field expects.
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls has not changed its statistics since 2016 — only its website, twice.
grex is a lookup table with a version number — it ships when the annotation moves.
See all hdnom alternatives → · See all parallelDist alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
They serve adjacent needs but don't currently overlap on shipped themes. hdnom is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. hdnom is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top hdnom alternatives in Analytics are ranked by recent ship velocity. Browse the "hdnom alternatives" section above for the current picks, or visit /alternatives/hdnom for the full list with editorial commentary on each.
Top parallelDist alternatives in Analytics are ranked by recent ship velocity. Browse the "parallelDist alternatives" section above for the current picks, or visit /alternatives/paralleldist for the full list with editorial commentary on each.