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Comparison · Infra & APIs
ggVennDiagram vs PEIMAN2
A side-by-side editorial comparison of ggVennDiagram and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.
ggVennDiagram vs PEIMAN2: at a glance
What is ggVennDiagram?
A Venn diagram package whose public release notes say almost nothing — including about its copyright cleanup.
ggVennDiagram draws Venn diagrams as ggplot2 objects. The visible release feed is thin and irregular: three entries between 2021 and 2024, two of which contain nothing but a pointer to NEWS. Only the most recent, V1.5, describes actual changes, and both of them are legal housekeeping rather than features.
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
ggVennDiagram vs PEIMAN2: editorial side-by-side
ggVennDiagram
0.0INFRA · APIS
A Venn diagram package whose public release notes say almost nothing — including about its copyright cleanup.
◆ Current state
ggVennDiagram draws Venn diagrams as ggplot2 objects. The visible release feed is thin and irregular: three entries between 2021 and 2024, two of which contain nothing but a pointer to NEWS. Only the most recent, V1.5, describes actual changes, and both of them are legal housekeeping rather than features.
◆ Where it's heading
What can be read here is not a feature direction but a tidying of provenance. V1.5 removed code copied from yulab.utils and made the package comply with the copyright terms of the venn package it draws on, with the yulab.utils maintainer appearing as a first-time contributor to do it. Everything else in the window defers to a changelog kept outside the feed, so the direction of the package itself is not readable from these entries.
◆ Prediction
No reliable prediction is available from this feed — the release notes are pointers rather than descriptions, and the visible entries skip whole version ranges.
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
Alternatives to ggVennDiagram and PEIMAN2
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggVennDiagram or PEIMAN2.
NGINX
nginx returns to feature work with PROXY v2 upstream writes, and quietly adds JSON to core.
ESPHome
ESPHome closes the 2026.8 cycle, but the release body is a bare link to the real notes.
vcfR
A genomics workhorse whose visible release feed stops dead in mid-2020.
dialr
The R phone-number package stopped only parsing numbers and started asking them where they are.
ordinalsimr
A Shiny app for choosing the right ordinal test reached CRAN in a single 90-minute burst of tags.
See all ggVennDiagram alternatives → · See all PEIMAN2 alternatives →
Recent activity from ggVennDiagram and PEIMAN2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 2y agoggVennDiagramCopied code removed and venn copyright terms satisfied
- 2y agoggVennDiagramCRAN release 1.4.9
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
- 5y agoggVennDiagramCRAN release v1.1.4
Frequently asked questions
What is the difference between ggVennDiagram and PEIMAN2?
They serve adjacent needs but don't currently overlap on shipped themes. ggVennDiagram and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ggVennDiagram better than PEIMAN2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ggVennDiagram and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to ggVennDiagram?
Top ggVennDiagram alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ggVennDiagram alternatives" section above for the current picks, or visit /alternatives/ggvenndiagram for the full list with editorial commentary on each.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.