qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
fossilsim vs windex
A side-by-side editorial comparison of fossilsim and windex — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:phylogeneticsr-package
fossilsim vs windex: at a glance
What is fossilsim?
A fossil-record simulator that quietly grew a trait-evolution engine.
FossilSim is a mature R package for simulating fossil records on phylogenetic trees, and its release cadence reflects that: long gaps punctuated by a single capability addition. The last four releases span three years, with the most recent being a compatibility sync to its companion Shiny front-end rather than new functionality. The core simulation surface has been stable since 2022.
What is windex?
Steady, unglamorous upkeep on a niche phylogenetic adaptation index.
windex calculates the Wheatsheaf index for measuring adaptation in a phylogenetic comparative framework, with supporting simulation tests and node-distance tooling. Recent releases have loosened the input format requirements, improved troubleshooting in treedatacheck, and added a barplot for fitted logistic regression models. The package's analytic core is unchanged across the visible window.
fossilsim vs windex: editorial side-by-side
fossilsim
0.0ANALYTICS
A fossil-record simulator that quietly grew a trait-evolution engine.
◆ Current state
FossilSim is a mature R package for simulating fossil records on phylogenetic trees, and its release cadence reflects that: long gaps punctuated by a single capability addition. The last four releases span three years, with the most recent being a compatibility sync to its companion Shiny front-end rather than new functionality. The core simulation surface has been stable since 2022.
◆ Where it's heading
The arc runs from sampling mechanics toward simulating what the organisms actually were. Version 2.2.0 taught the package to handle occurrence data for occurrence birth-death models; 2.3.0 then added trait simulation under Mk, BM and OU, which is a different kind of output than fossil ages. Since then the work has been maintenance and keeping the FossilSimShiny GUI in step, suggesting the authors consider the current model set feature-complete.
◆ Prediction
The pairing of the 2.3.3 release with a FossilSimShiny version bump points to the GUI, not the library, as where the next visible work lands. The entries do not show enough activity to predict a specific new model family.
windex
0.0ANALYTICS
Steady, unglamorous upkeep on a niche phylogenetic adaptation index.
◆ Current state
windex calculates the Wheatsheaf index for measuring adaptation in a phylogenetic comparative framework, with supporting simulation tests and node-distance tooling. Recent releases have loosened the input format requirements, improved troubleshooting in treedatacheck, and added a barplot for fitted logistic regression models. The package's analytic core is unchanged across the visible window.
◆ Where it's heading
Every release in this window is a variation on the same theme: make existing functions easier to use and their plots easier to customise. Some releases exist only to satisfy CRAN policy changes with no functional difference. This is a stable single-purpose package where usability friction, not method development, drives the work.
◆ Prediction
Expect further small usability and plotting additions on the same roughly annual cadence; nothing here points to new methods.
Alternatives to fossilsim and windex
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either fossilsim or windex.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
See all fossilsim alternatives → · See all windex alternatives →
Recent activity from fossilsim and windex
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agowindexRelaxes input formats; adds logistic regression barplots
- 2y agofossilsimCompatibility bump for FossilSimShiny 1.1.2
- 2y agowindexwindex 2.0.8
- 2y agowindexnodeDist returns age distributions; plot axes customisable
- 2y agowindexCRAN policy compliance release, no functional change
- 4y agofossilsimBug fixes and documentation cleanup
- 4y agofossilsimTrait simulation arrives: Mk, BM and OU models ⚡
- 5y agowindexMerges sister-clade functions into richYuleInputs
- 5y agofossilsimOccurrence handling for the occurrence birth-death model
- 5y agowindexAdds modSel.geiger for geiger model selection tables
Frequently asked questions
What is the difference between fossilsim and windex?
Both compete on the same themes — phylogenetics, r-package — within Analytics. fossilsim and windex are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is fossilsim better than windex?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. fossilsim and windex are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to fossilsim?
Top fossilsim alternatives in Analytics are ranked by recent ship velocity. Browse the "fossilsim alternatives" section above for the current picks, or visit /alternatives/fossilsim-r for the full list with editorial commentary on each.
What are the best alternatives to windex?
Top windex alternatives in Analytics are ranked by recent ship velocity. Browse the "windex alternatives" section above for the current picks, or visit /alternatives/windex-r for the full list with editorial commentary on each.