simlandr
Potential landscape tooling settling onto standard R generics after two rounds of renaming.
Comparison · Analytics
forecasting vs STACAS
A side-by-side editorial comparison of forecasting and STACAS — release velocity, themes, recent moves, and the top alternatives to consider.
forecasting vs STACAS: at a glance
What is forecasting?
HIDDA.forecasting is a book chapter's reproducibility artifact, not a package under development.
HIDDA.forecasting accompanies a book chapter on forecasting infectious disease counts; its vignettes reproduce the results presented there using arima, prophet, glarma, hhh4contacts and scoringRules. The 1.0.0 release states this outright — it is the version used for the chapter, pinned to CRAN package versions as of July 2018. Every release since has been a vignette rebuild against newer R and dependency versions.
What is STACAS?
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
STACAS integrates single-cell RNA-seq datasets by finding and weighting anchors between them, with rPCA-distance-based downweighting and an optional semi-supervised mode that uses cell type labels to discard inconsistent anchors. IntegrateData.STACAS() performs the integration natively rather than handing off, and StandardizeGeneSymbols() normalises gene naming across datasets before anchors are computed.
forecasting vs STACAS: editorial side-by-side
forecasting
0.0ANALYTICS
HIDDA.forecasting is a book chapter's reproducibility artifact, not a package under development.
◆ Current state
HIDDA.forecasting accompanies a book chapter on forecasting infectious disease counts; its vignettes reproduce the results presented there using arima, prophet, glarma, hhh4contacts and scoringRules. The 1.0.0 release states this outright — it is the version used for the chapter, pinned to CRAN package versions as of July 2018. Every release since has been a vignette rebuild against newer R and dependency versions.
◆ Where it's heading
The release pattern is maintenance on an eight-year cadence dictated entirely by the surrounding ecosystem: 1.1.1 rebuilt under R 4.0.4, 1.1.2 under R 4.3.2, 1.1.3 under R 4.6.1, each reporting whether the numbers moved. They mostly have not — the recurring note is minor numerical differences confined to the prophet forecasts in vignette('CHILI_prophet'). The only substantive change in the visible history is 1.1.0's methodological tidy-up of the scoring comparisons.
◆ Prediction
Nothing in these entries points to new functionality; the next release is most likely another vignette rebuild whenever a dependency change or a CRAN check failure forces one.
STACAS
0.0ANALYTICS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
◆ Current state
STACAS integrates single-cell RNA-seq datasets by finding and weighting anchors between them, with rPCA-distance-based downweighting and an optional semi-supervised mode that uses cell type labels to discard inconsistent anchors. IntegrateData.STACAS() performs the integration natively rather than handing off, and StandardizeGeneSymbols() normalises gene naming across datasets before anchors are computed.
◆ Where it's heading
The method work concentrated in version 2.0 and has been stable since; everything after is Seurat compatibility and operational robustness. Versions 2.1.1 through 2.3.0 track Seurat v5 assays, v3-to-v5 conversion, multi-layer objects and SCT normalisation, with the genuinely useful additions — a reference seed dataset, max.seed.datasets for large-scale integration, min.sample.size — arriving as side effects of that work. The package is from the same lab as GeneNMF, and its release rhythm follows the single-cell ecosystem's upstream churn rather than an internal roadmap.
◆ Prediction
Expect the next release to follow further Seurat object-model changes, which have driven the last three. Nothing in the entries indicates new anchor-scoring or correction methodology in progress.
Alternatives to forecasting and STACAS
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either forecasting or STACAS.
lavaanExtra
SEM reporting helpers converging on APA output, one CRAN resubmission at a time.
ibis.iSDM
A raster-to-terra migration is the only readable change in a feed of merge notes.
anyflights
A nycflights13 generator whose recent work is all about the data being right.
vinereg
Conditional density and log-likelihood fill out a vine copula regression package.
stringx
A drop-in string API for base R, kept alive by upstream check failures.
See all forecasting alternatives → · See all STACAS alternatives →
Recent activity from forecasting and STACAS
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoforecastingVignettes rebuilt under R 4.6.1
- 1y agoSTACASMulti-layer objects and Seurat v3-to-v5 conversion handled
- 2y agoSTACASscale.data option for extreme batch effects; gene name conversion table
- 2y agoforecastingVignettes rebuilt under R 4.3.2
- 3y agoSTACASReference seeding, gene symbol standardisation, large-scale integration path
- 4y agoSTACASSemi-supervised integration and rPCA anchor downweighting ⚡
- 5y agoforecastingVignettes rebuilt under R 4.0.4
- 5y agoSTACASSeurat 4.0.0 compatibility and SCTransform support
- 7y agoforecastingStandard PIT and discretized log-normal scoring
- 7y agoforecastingThe version used for the book chapter, with pinned dependencies
Frequently asked questions
What is the difference between forecasting and STACAS?
They serve adjacent needs but don't currently overlap on shipped themes. forecasting and STACAS are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is forecasting better than STACAS?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. forecasting and STACAS are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to forecasting?
Top forecasting alternatives in Analytics are ranked by recent ship velocity. Browse the "forecasting alternatives" section above for the current picks, or visit /alternatives/forecasting for the full list with editorial commentary on each.
What are the best alternatives to STACAS?
Top STACAS alternatives in Analytics are ranked by recent ship velocity. Browse the "STACAS alternatives" section above for the current picks, or visit /alternatives/stacas for the full list with editorial commentary on each.