gcube
gcube's recent releases are all packaging metadata, not simulation code
Comparison · Analytics
fillpattern vs UCell
A side-by-side editorial comparison of fillpattern and UCell — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
fillpattern vs UCell: at a glance
What is fillpattern?
Pattern fills for ggplot2, hardened against the ways users write sizes
fillpattern provides pattern fills — stripes, bricks, dots — for ggplot2 and base R graphics, aimed at figures that must stay legible in greyscale or to colour-blind readers. The 1.0.3 release is mostly defensive: size modifier strings ending in a colon no longer swap width for height, modify_size() reports invalid units instead of crashing and understands in, inches and cm, and a background colour bug in scale_fill_pattern() is fixed. The minimum R version rises to 4.2.0 for recent graphics engine features.
What is UCell?
A rank-based gene signature scorer that has grown by adapting to whatever object format single-cell R uses next
UCell scores gene signatures in single-cell data using a rank-based metric that is robust to dataset composition. Its release history reads as a sequence of ecosystem accommodations: Bioconductor submission in 2.0, SmoothKNN() for k-nearest-neighbor smoothing of scores in 2.2, smoothing applied directly to expression slots in 2.4, Seurat v5 assay compatibility in 2.6, multi-layer Seurat v5 objects in 2.8, and a missing_genes parameter in 2.14 that lets callers impute or skip signature genes absent from the data. Version 2.16 tracks Bioconductor 3.23 and points at a new publication and a Python implementation, pyUCell.
fillpattern vs UCell: editorial side-by-side
fillpattern
0.0ANALYTICS
Pattern fills for ggplot2, hardened against the ways users write sizes
◆ Current state
fillpattern provides pattern fills — stripes, bricks, dots — for ggplot2 and base R graphics, aimed at figures that must stay legible in greyscale or to colour-blind readers. The 1.0.3 release is mostly defensive: size modifier strings ending in a colon no longer swap width for height, modify_size() reports invalid units instead of crashing and understands in, inches and cm, and a background colour bug in scale_fill_pattern() is fixed. The minimum R version rises to 4.2.0 for recent graphics engine features.
◆ Where it's heading
Development is slow and entirely reactive to how the string-based size interface fails. The pattern across releases is the same: a user hits an edge — very small fill areas in 1.0.2, malformed unit strings in 1.0.3 — and the fix is either a graceful fallback or a clearer error. Leaning on R's newer graphics engine rather than reimplementing pattern rendering keeps the package small at the cost of raising its version floor.
◆ Prediction
Expect further releases to stay in the same register: parsing and validation fixes for the size and unit interface, with the pattern set itself unlikely to change.
UCell
0.0ANALYTICS
A rank-based gene signature scorer that has grown by adapting to whatever object format single-cell R uses next
◆ Current state
UCell scores gene signatures in single-cell data using a rank-based metric that is robust to dataset composition. Its release history reads as a sequence of ecosystem accommodations: Bioconductor submission in 2.0, SmoothKNN() for k-nearest-neighbor smoothing of scores in 2.2, smoothing applied directly to expression slots in 2.4, Seurat v5 assay compatibility in 2.6, multi-layer Seurat v5 objects in 2.8, and a missing_genes parameter in 2.14 that lets callers impute or skip signature genes absent from the data. Version 2.16 tracks Bioconductor 3.23 and points at a new publication and a Python implementation, pyUCell.
◆ Where it's heading
Two threads run through this. The scoring algorithm itself has barely changed — the rank-based core is stable, and 2.14's reformatting to gene indices rather than string matching is a speed change, not a method change. What does change constantly is object-format compatibility, which is the tax of living between Seurat and SingleCellExperiment. The pyUCell reference in 2.16 is the first sign of the method reaching beyond R, though these notes say nothing about its scope.
◆ Prediction
The cadence is locked to Bioconductor's twice-yearly release train, so the next version will most likely accompany Bioconductor 3.24 with whatever Seurat or SingleCellExperiment changes it brings.
Alternatives to fillpattern and UCell
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either fillpattern or UCell.
cubist
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
ggstats
ggstats keeps widening what a coefficient or Likert plot can be
ecodive
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
simStateSpace
State-space data simulation for R, filled in one function at a time
rollama
rollama turns a local-LLM wrapper into an instrument for reproducible annotation
See all fillpattern alternatives → · See all UCell alternatives →
Recent activity from fillpattern and UCell
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agoUCellTracks Bioconductor 3.23 and points to a Python port
- 6mo agofillpatternSize string parsing fixed; invalid units now report instead of crash
- 9mo agoUCellUCell version 2.14
- 2y agofillpatternSmall fill areas no longer crash; min_size falls back to solid
- 2y agoUCellUCell version 2.8
- 2y agofillpatternfillpattern 1.0.1
- 2y agoUCellUCell version 2.6
- 3y agoUCellUCell version 2.4
- 3y agoUCellUCell version 2.2
Frequently asked questions
What is the difference between fillpattern and UCell?
Both compete on the same themes — r-package — within Analytics. fillpattern and UCell are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is fillpattern better than UCell?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. fillpattern and UCell are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to fillpattern?
Top fillpattern alternatives in Analytics are ranked by recent ship velocity. Browse the "fillpattern alternatives" section above for the current picks, or visit /alternatives/fillpattern for the full list with editorial commentary on each.
What are the best alternatives to UCell?
Top UCell alternatives in Analytics are ranked by recent ship velocity. Browse the "UCell alternatives" section above for the current picks, or visit /alternatives/ucell for the full list with editorial commentary on each.