pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
fastpos vs jSDM
A side-by-side editorial comparison of fastpos and jSDM — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:rcpp
fastpos vs jSDM: at a glance
What is fastpos?
Dormant three years, then a two-line release nobody using it would notice
fastpos finds the critical point of stability for a Pearson correlation, a simulation problem whose C++ implementation is the entire reason the package exists. Its substantive work concluded in 2022 with 0.5.0, the release prepared during R Journal review, which renamed the precision parameters, moved multicore work to pbapply and let users set corridor limits directly. After three years of silence, 0.6.0 removes an internal restriction to cpp11 and changes index_pop to an integer.
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
fastpos vs jSDM: editorial side-by-side
fastpos
0.0INFRA · APIS
Dormant three years, then a two-line release nobody using it would notice
◆ Current state
fastpos finds the critical point of stability for a Pearson correlation, a simulation problem whose C++ implementation is the entire reason the package exists. Its substantive work concluded in 2022 with 0.5.0, the release prepared during R Journal review, which renamed the precision parameters, moved multicore work to pbapply and let users set corridor limits directly. After three years of silence, 0.6.0 removes an internal restriction to cpp11 and changes index_pop to an integer.
◆ Where it's heading
This is a finished piece of research software in low-effort upkeep. The changelog's centre of gravity is the R Journal review process, and once that concluded the package stopped changing. The single release since is toolchain work of the kind that keeps a package compiling rather than anything a user would see.
◆ Prediction
Expect nothing beyond occasional compilation or CRAN-check fixes unless the accompanying paper draws requests for other correlation types or resampling schemes.
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
Alternatives to fastpos and jSDM
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either fastpos or jSDM.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all fastpos alternatives → · See all jSDM alternatives →
Recent activity from fastpos and jSDM
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 10mo agofastposcpp11 restriction removed; index_pop now an integer
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
- 4y agofastposMulticore fix for pbmcapply; Windows limited to one core
- 4y agofastposR Journal review release: renamed precision parameters, manual corridor limits
- 5y agofastposMore informative test failures; interactive-only progress bars
- 6y agofastposMulticore support via the future package
- 6y agofastposExact-rho population generation and C++ progress bar fixes
Frequently asked questions
What is the difference between fastpos and jSDM?
Both compete on the same themes — rcpp — within Infra & APIs. fastpos and jSDM are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is fastpos better than jSDM?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. fastpos and jSDM are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to fastpos?
Top fastpos alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "fastpos alternatives" section above for the current picks, or visit /alternatives/fastpos for the full list with editorial commentary on each.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.