paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
EvoPhylo vs tidytransit
A side-by-side editorial comparison of EvoPhylo and tidytransit — release velocity, themes, recent moves, and the top alternatives to consider.
EvoPhylo vs tidytransit: at a glance
What is EvoPhylo?
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
What is tidytransit?
tidytransit tracks the GTFS spec as it grows, one reader and one router feature at a time.
tidytransit reads GTFS transit feeds into tidy data frames and computes travel times using a RAPTOR implementation. Recent work splits between the reader keeping pace with the spec — locations.geojson in 1.7.0, empty strings parsed as NA in 1.8.0 — and the router gaining realism, most recently in-seat transfers. Feed specifications are now pulled from the automatically parsed GTFS reference rather than maintained by hand.
EvoPhylo vs tidytransit: editorial side-by-side
EvoPhylo
0.0ANALYTICS
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
◆ Current state
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
◆ Where it's heading
The package's substantive arc ended with the 0.3.2 publication release, which arrived with peer-review revisions and three first-time contributors — the shape of software built to accompany a paper. What follows is thin: a MrBayes plotting correction in 0.3.3, then a two-year gap and a release with no described contents. The August 2025 entry may contain real work, but the notes give a reader nothing to judge.
◆ Prediction
Without release notes on the latest version there is no observable basis for predicting the next move; the two-year gap before it suggests activity tied to specific research needs rather than a maintenance cadence.
tidytransit
0.0ANALYTICS
tidytransit tracks the GTFS spec as it grows, one reader and one router feature at a time.
◆ Current state
tidytransit reads GTFS transit feeds into tidy data frames and computes travel times using a RAPTOR implementation. Recent work splits between the reader keeping pace with the spec — locations.geojson in 1.7.0, empty strings parsed as NA in 1.8.0 — and the router gaining realism, most recently in-seat transfers. Feed specifications are now pulled from the automatically parsed GTFS reference rather than maintained by hand.
◆ Where it's heading
The package has settled into tracking an external standard, which is why the changelog reads as a sequence of spec conformance items rather than a roadmap. Parsing responsibility keeps shifting outward to gtfsio, and data sources have moved with the ecosystem, from the retired transitfeeds API to MobilityData. Router changes are rarer than reader changes but land in the same releases.
◆ Prediction
Further GTFS spec features are the safest expectation, with GTFS-Flex the likeliest area now that locations.geojson reading is in place.
Alternatives to EvoPhylo and tidytransit
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either EvoPhylo or tidytransit.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all EvoPhylo alternatives → · See all tidytransit alternatives →
Recent activity from EvoPhylo and tidytransit
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agotidytransitIn-seat transfers supported in raptor() and travel_times()
- 11mo agoEvoPhyloEvoPhylo v. 0.3.5
- 11mo agotidytransitstop_group_distances() no longer ignores the by parameter
- 1y agotidytransitlocations.geojson reading; specs parsed from the GTFS reference
- 2y agotidytransitfare_media_id added to fare_products spec
- 3y agoEvoPhyloEvoPhylo 0.3.3 fixes back-rate plots for MrBayes
- 3y agotidytransitinterpolate_stop_times() added; router updated
- 3y agotidytransitDuplicated primary key check improved
- 3y agoEvoPhyloEvoPhylo 0.3.2 adds BEAST2 support for FBD and rates
Frequently asked questions
What is the difference between EvoPhylo and tidytransit?
They serve adjacent needs but don't currently overlap on shipped themes. EvoPhylo and tidytransit are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is EvoPhylo better than tidytransit?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. EvoPhylo and tidytransit are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to EvoPhylo?
Top EvoPhylo alternatives in Analytics are ranked by recent ship velocity. Browse the "EvoPhylo alternatives" section above for the current picks, or visit /alternatives/evophylo for the full list with editorial commentary on each.
What are the best alternatives to tidytransit?
Top tidytransit alternatives in Analytics are ranked by recent ship velocity. Browse the "tidytransit alternatives" section above for the current picks, or visit /alternatives/tidytransit-r for the full list with editorial commentary on each.