paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
EvoPhylo vs survminer
A side-by-side editorial comparison of EvoPhylo and survminer — release velocity, themes, recent moves, and the top alternatives to consider.
EvoPhylo vs survminer: at a glance
What is EvoPhylo?
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
What is survminer?
survminer is back after a five-year gap, and spending it cutting dependencies loose.
survminer draws Kaplan-Meier curves and Cox diagnostics on top of ggplot2, and it sits under a large share of published survival figures. After a long dormancy it has shipped three releases since late 2024, and all of them are about staying compatible: with ggplot2 3.5, then 4.0, and now without survMisc, whose weighted log-rank tests are computed internally in base R as of 0.5.2. The plotting API itself has not changed.
EvoPhylo vs survminer: editorial side-by-side
EvoPhylo
0.0ANALYTICS
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
◆ Current state
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
◆ Where it's heading
The package's substantive arc ended with the 0.3.2 publication release, which arrived with peer-review revisions and three first-time contributors — the shape of software built to accompany a paper. What follows is thin: a MrBayes plotting correction in 0.3.3, then a two-year gap and a release with no described contents. The August 2025 entry may contain real work, but the notes give a reader nothing to judge.
◆ Prediction
Without release notes on the latest version there is no observable basis for predicting the next move; the two-year gap before it suggests activity tied to specific research needs rather than a maintenance cadence.
survminer
0.0ANALYTICS
survminer is back after a five-year gap, and spending it cutting dependencies loose.
◆ Current state
survminer draws Kaplan-Meier curves and Cox diagnostics on top of ggplot2, and it sits under a large share of published survival figures. After a long dormancy it has shipped three releases since late 2024, and all of them are about staying compatible: with ggplot2 3.5, then 4.0, and now without survMisc, whose weighted log-rank tests are computed internally in base R as of 0.5.2. The plotting API itself has not changed.
◆ Where it's heading
This is a revival by maintenance, not by feature work — the same pattern as its sibling packages from the same author. The dependency surface is being reduced rather than extended, and each release absorbs a breaking change from ggplot2 that would otherwise leave existing scripts producing errors or misaligned risk tables. Compatibility fixes now arrive within months of the upstream change rather than years.
◆ Prediction
Continued ggplot2 4.x tracking is the most likely next release content, since 0.5.2 already carries fixes for 4.0.x aesthetics and the GeomConfint stairstep problem.
Alternatives to EvoPhylo and survminer
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either EvoPhylo or survminer.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all EvoPhylo alternatives → · See all survminer alternatives →
Recent activity from EvoPhylo and survminer
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agosurvminersurvMisc dependency removed; weighted log-rank tests moved in-house
- 11mo agosurvminerRisk-table misalignment fixed via dynamic panel detection
- 11mo agoEvoPhyloEvoPhylo v. 0.3.5
- 1y agosurvminerggcoxzph() sd scaling corrected; tidyverse deprecations cleared
- 3y agoEvoPhyloEvoPhylo 0.3.3 fixes back-rate plots for MrBayes
- 3y agoEvoPhyloEvoPhylo 0.3.2 adds BEAST2 support for FBD and rates
- 5y agosurvminerGehan-Breslow p-value corrected for log.rank.weights = n
- 6y agosurvminerbroom 0.7.0 compatibility fix in ggforest()
- 6y agosurvminersurv_adjustedcurves() separates computation from plotting
Frequently asked questions
What is the difference between EvoPhylo and survminer?
They serve adjacent needs but don't currently overlap on shipped themes. EvoPhylo and survminer are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is EvoPhylo better than survminer?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. EvoPhylo and survminer are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to EvoPhylo?
Top EvoPhylo alternatives in Analytics are ranked by recent ship velocity. Browse the "EvoPhylo alternatives" section above for the current picks, or visit /alternatives/evophylo for the full list with editorial commentary on each.
What are the best alternatives to survminer?
Top survminer alternatives in Analytics are ranked by recent ship velocity. Browse the "survminer alternatives" section above for the current picks, or visit /alternatives/survminer for the full list with editorial commentary on each.