paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
EvoPhylo vs spatstat
A side-by-side editorial comparison of EvoPhylo and spatstat — release velocity, themes, recent moves, and the top alternatives to consider.
EvoPhylo vs spatstat: at a glance
What is EvoPhylo?
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
What is spatstat?
The spatstat umbrella package, now mostly a pointer to the sub-packages doing the work
spatstat is the front package of a family that was split into specialised components — spatstat.geom, spatstat.random, spatstat.model, spatstat.explore, spatstat.univar and spatstat.sparse. Its own release notes reflect that: entries in this window are largely announcements of where the real changes landed, plus documentation and cross-reference maintenance. The codebase it fronts passed 200,000 lines as of 3.5-1.
EvoPhylo vs spatstat: editorial side-by-side
EvoPhylo
0.0ANALYTICS
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
◆ Current state
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
◆ Where it's heading
The package's substantive arc ended with the 0.3.2 publication release, which arrived with peer-review revisions and three first-time contributors — the shape of software built to accompany a paper. What follows is thin: a MrBayes plotting correction in 0.3.3, then a two-year gap and a release with no described contents. The August 2025 entry may contain real work, but the notes give a reader nothing to judge.
◆ Prediction
Without release notes on the latest version there is no observable basis for predicting the next move; the two-year gap before it suggests activity tied to specific research needs rather than a maintenance cadence.
spatstat
0.0ANALYTICS
The spatstat umbrella package, now mostly a pointer to the sub-packages doing the work
◆ Current state
spatstat is the front package of a family that was split into specialised components — spatstat.geom, spatstat.random, spatstat.model, spatstat.explore, spatstat.univar and spatstat.sparse. Its own release notes reflect that: entries in this window are largely announcements of where the real changes landed, plus documentation and cross-reference maintenance. The codebase it fronts passed 200,000 lines as of 3.5-1.
◆ Where it's heading
The split is effectively complete and the umbrella's role has settled into coordination — tracking version dependencies across sub-packages and pointing users to them. The family has kept subdividing over this period, with spatstat.univar joining in 3.1-0. The one substantive user-facing addition here is documentation infrastructure: 3.3-0 added the ability to list the history of changes to a specific function, which is a navigational answer to a codebase now spread across many packages.
◆ Prediction
Expect this package's notes to continue summarising sub-package activity rather than carrying features of its own, since every release in this window does exactly that. Read spatstat.geom, spatstat.random and spatstat.model for the substance.
Alternatives to EvoPhylo and spatstat
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either EvoPhylo or spatstat.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all EvoPhylo alternatives → · See all spatstat alternatives →
Recent activity from EvoPhylo and spatstat
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agospatstatSub-package updates across sparse, univar and random
- 6mo agospatstatspatstat passes 200,000 lines of code
- 10mo agospatstatNew vignette documenting NA spatial objects
- 11mo agoEvoPhyloEvoPhylo v. 0.3.5
- 1y agospatstatPer-function change history now listable
- 2y agospatstatspatstat.univar joins the package family
- 3y agoEvoPhyloEvoPhylo 0.3.3 fixes back-rate plots for MrBayes
- 3y agospatstatSub-package cross-references and docs corrected
- 3y agoEvoPhyloEvoPhylo 0.3.2 adds BEAST2 support for FBD and rates
Frequently asked questions
What is the difference between EvoPhylo and spatstat?
They serve adjacent needs but don't currently overlap on shipped themes. EvoPhylo and spatstat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is EvoPhylo better than spatstat?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. EvoPhylo and spatstat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to EvoPhylo?
Top EvoPhylo alternatives in Analytics are ranked by recent ship velocity. Browse the "EvoPhylo alternatives" section above for the current picks, or visit /alternatives/evophylo for the full list with editorial commentary on each.
What are the best alternatives to spatstat?
Top spatstat alternatives in Analytics are ranked by recent ship velocity. Browse the "spatstat alternatives" section above for the current picks, or visit /alternatives/spatstat-r for the full list with editorial commentary on each.