phyloatlas
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
Comparison · Infra & APIs
eratosthenes vs microeco
A side-by-side editorial comparison of eratosthenes and microeco — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
eratosthenes vs microeco: at a glance
What is eratosthenes?
eratosthenes spends 0.1.0 hardening inputs rather than adding chronology methods.
eratosthenes does Bayesian estimation of archaeological chronologies from relative sequences, absolute constraints and artifact assemblages. The 0.0.9 line built out the inference diagnostics — traceplots, histograms, batch-means MCSE reporting, displacement estimation — and then consolidated artifact probability-density estimation into a single gibbs_ad_type(). The 0.1.0 tag turns outward instead, adding validators for every user-supplied structure and replacing seq_check() with a more informative seq_diag().
What is microeco?
A microbiome analysis framework quietly grew a metabolomics half
microeco is a class-based R framework for microbial community data, organised as trans_* analysis objects layered over a microtable container. The 2.x line added trans_metab for metabolomics in 2.1.0, built pathway calculation, enrichment and network functions onto it in 2.2.0, and reached 2.3.0 with trans_niche and trans_phylo classes plus graphml export from the network module. Release notes are dense bullet lists where a handful of new classes sit among fifteen to twenty parameter fixes.
eratosthenes vs microeco: editorial side-by-side
eratosthenes
2.5INFRA · APIS
eratosthenes spends 0.1.0 hardening inputs rather than adding chronology methods.
◆ Current state
eratosthenes does Bayesian estimation of archaeological chronologies from relative sequences, absolute constraints and artifact assemblages. The 0.0.9 line built out the inference diagnostics — traceplots, histograms, batch-means MCSE reporting, displacement estimation — and then consolidated artifact probability-density estimation into a single gibbs_ad_type(). The 0.1.0 tag turns outward instead, adding validators for every user-supplied structure and replacing seq_check() with a more informative seq_diag().
◆ Where it's heading
The package is moving from research code to something a non-author can run. Consolidating estimation behind one function, then wrapping every input class in a validator, are the two steps that make failures legible instead of cryptic, and the diagnostics added earlier serve the same end for the sampler itself. Nothing in the window changes the underlying model; the work is all about making it usable and its output checkable.
◆ Prediction
With inputs validated and diagnostics in place, the next release is more likely to extend the constraint or assemblage modelling than to keep reworking the interface, though the feed's three sparse tags give little to read a cadence from.
microeco
0.0INFRA · APIS
A microbiome analysis framework quietly grew a metabolomics half
◆ Current state
microeco is a class-based R framework for microbial community data, organised as trans_* analysis objects layered over a microtable container. The 2.x line added trans_metab for metabolomics in 2.1.0, built pathway calculation, enrichment and network functions onto it in 2.2.0, and reached 2.3.0 with trans_niche and trans_phylo classes plus graphml export from the network module. Release notes are dense bullet lists where a handful of new classes sit among fifteen to twenty parameter fixes.
◆ Where it's heading
The package expands by adding analysis classes rather than rewriting existing ones, and the 2.x series widened its scope from microbial community structure to paired omics. trans_metab was the pivot; niche and phylogenetic classes in 2.3.0 extend the original microbiome side in parallel. Alongside that, a long maintenance thread tracks upstream churn - linewidth replacing size for ggplot2 v4.0, igraph namespace changes, lifecycle deprecations - which accounts for most of the bullet volume in any given release.
◆ Prediction
Expect further trans_* classes filling gaps around the metabolomics arm, since every 2.x release so far has introduced at least one new class alongside its fix list.
Alternatives to eratosthenes and microeco
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either eratosthenes or microeco.
OpenLand
Land-change analysis in R that has spent six years defending one download link.
FoRecoML
The machine-learning arm of a forecast reconciliation toolkit, four months old and already sharing its sibling's plumbing.
FoReco
Forecast reconciliation with a real object model, five years after it started returning bare matrices.
wooldridge
A textbook data package whose whole job is to stay installable, and whose releases prove how much work that is.
L1centrality
A graph-centrality package that spent 2026 making its existing measures usable at scale, then went quiet.
See all eratosthenes alternatives → · See all microeco alternatives →
Recent activity from eratosthenes and microeco
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10d agoeratosthenesInput validators added; seq_check() replaced by seq_diag()
- 1mo agomicroecoNiche and phylogenetic analysis classes join the framework
- 3mo agomicroecoPathway calculation, enrichment and network functions build out trans_metab
- 4mo agomicroecotrans_metab class brings metabolomics into a microbiome framework ⚡
- 6mo agomicroecoStatistical functions gain direct visualization, plus a volcano plot
- 9mo agomicroecoggplot2 v4.0 compatibility pass plus network and normalization options
- 1y agoeratosthenesArtifact p.d.f. estimation consolidated into gibbs_ad_type()
- 1y agoeratosthenesMCMC diagnostics arrive: traceplots, histograms, batch-means MCSE
- 1y agomicroecoParameter renames and namespace fixes across the trans_ classes
Frequently asked questions
What is the difference between eratosthenes and microeco?
Both compete on the same themes — r-package — within Infra & APIs. eratosthenes is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is eratosthenes better than microeco?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. eratosthenes is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to eratosthenes?
Top eratosthenes alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "eratosthenes alternatives" section above for the current picks, or visit /alternatives/eratosthenes for the full list with editorial commentary on each.
What are the best alternatives to microeco?
Top microeco alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "microeco alternatives" section above for the current picks, or visit /alternatives/microeco for the full list with editorial commentary on each.