EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
epiworldR vs mutagen
A side-by-side editorial comparison of epiworldR and mutagen — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
epiworldR vs mutagen: at a glance
What is epiworldR?
epiworldR is a thin R shell whose releases track the C++ simulator underneath it
Almost every release here is a version bump of the underlying epiworld C++ library, wrapped and pushed to CRAN. The substantive R-side work is narrow and consistent: exposing simulation outputs that were already computed but not reachable from R — outbreak size, active cases, hospitalizations and their savers. The newest release addresses an AddressSanitizer finding, which is the kind of thing CRAN checks surface on a compiled package.
What is mutagen?
A young package porting Stata's egen row-wise helpers to the tidyverse, one function per release
mutagen provides row-wise column-generation helpers for R data frames in the spirit of Stata's egen — gen_rowmean(), gen_rowsum(), gen_rowsd(), gen_rownonmiss() and about a dozen siblings. It reached 0.5.0 within three months of its first release, adding two or three functions each time. The most recent release adds gen_coldiff() and renames two functions to fit the naming scheme.
epiworldR vs mutagen: editorial side-by-side
epiworldR
0.0ANALYTICS
epiworldR is a thin R shell whose releases track the C++ simulator underneath it
◆ Current state
Almost every release here is a version bump of the underlying epiworld C++ library, wrapped and pushed to CRAN. The substantive R-side work is narrow and consistent: exposing simulation outputs that were already computed but not reachable from R — outbreak size, active cases, hospitalizations and their savers. The newest release addresses an AddressSanitizer finding, which is the kind of thing CRAN checks surface on a compiled package.
◆ Where it's heading
The R package's job is staying current with the simulator and satisfying CRAN, not evolving its own interface. What direction it has shows in which model outputs get exposed next, and in a steady tidy-up of the build — the custom configure script was dropped in favour of R's built-in C++17 and OpenMP settings, and test coverage has been filled in across several releases with automated assistance.
◆ Prediction
Expect the next release to track another epiworld version bump, with any R-side addition most likely being one more exposed metric or saver, following the pattern of get_hospitalizations and get_outbreak_size.
mutagen
0.0ANALYTICS
A young package porting Stata's egen row-wise helpers to the tidyverse, one function per release
◆ Current state
mutagen provides row-wise column-generation helpers for R data frames in the spirit of Stata's egen — gen_rowmean(), gen_rowsum(), gen_rowsd(), gen_rownonmiss() and about a dozen siblings. It reached 0.5.0 within three months of its first release, adding two or three functions each time. The most recent release adds gen_coldiff() and renames two functions to fit the naming scheme.
◆ Where it's heading
The package is filling out a known surface rather than discovering one: the reference implementation exists in Stata, so development is a matter of working through the list. Alongside that, the naming convention is still settling — gen_rowmatch became gen_rowany, gen_percent became gen_colpercent, gen_na_listcol became gen_listcol_na — which is normal for a pre-1.0 package but means callers should expect further renames. Contributions are arriving from several first-time contributors.
◆ Prediction
The gen_col* prefix has only two members against a dozen gen_row* functions, so column-wise coverage is the obvious gap; expect it to fill before the naming stabilises for a 1.0.
Alternatives to epiworldR and mutagen
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either epiworldR or mutagen.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all epiworldR alternatives → · See all mutagen alternatives →
Recent activity from epiworldR and mutagen
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agoepiworldR0.14.0 addresses an AddressSanitizer finding
- 5mo agoepiworldRWrapper bumped to track a new epiworld version
- 5mo agoepiworldRBuild drops the custom configure script for R's C++17 and OpenMP settings
- 6mo agoepiworldRepiworld bumped to 0.11.2
- 7mo agoepiworldRTests updated at CRAN's request
- 7mo agoepiworldRHospitalizations, outbreak size and active cases exposed to R
- 8mo agomutagengen_coldiff() added; two functions renamed for consistency
- 9mo agomutagengen_rowsum() and gen_rowsd() added
- 9mo agomutagengen_rownonmiss() and gen_rowall() added
- 9mo agomutagenRow mean, median and missingness helpers; gen_rowmatch renamed
- 11mo agomutagenFirst release with the row-wise gen_* family
Frequently asked questions
What is the difference between epiworldR and mutagen?
Both compete on the same themes — r-package — within Analytics. epiworldR and mutagen are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is epiworldR better than mutagen?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. epiworldR and mutagen are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to epiworldR?
Top epiworldR alternatives in Analytics are ranked by recent ship velocity. Browse the "epiworldR alternatives" section above for the current picks, or visit /alternatives/epiworldr for the full list with editorial commentary on each.
What are the best alternatives to mutagen?
Top mutagen alternatives in Analytics are ranked by recent ship velocity. Browse the "mutagen alternatives" section above for the current picks, or visit /alternatives/mutagen-r for the full list with editorial commentary on each.