mrbayes
mrbayes spent 2026 auditing its own Bayesian MR estimators for coding errors.
Comparison · Analytics
EpiNow2 vs icesSAG
A side-by-side editorial comparison of EpiNow2 and icesSAG — release velocity, themes, recent moves, and the top alternatives to consider.
EpiNow2 vs icesSAG: at a glance
What is EpiNow2?
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
What is icesSAG?
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
icesSAG is the R client for the ICES Stock Assessment Graphs database, used by fisheries scientists to retrieve and publish stock assessment summaries and figures. The 1.5.0 release repointed every function at a new API, replaced token authentication with JWT via icesConnect, and dropped file upload entirely. Upload returned in 1.6.2, now routing through icesDatsu to check file format and validate data before submission.
EpiNow2 vs icesSAG: editorial side-by-side
EpiNow2
0.0ANALYTICS
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
◆ Current state
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
◆ Where it's heading
The package spent this window paying down interface debt and is now extending from the tidier base. Options that existed only for `estimate_infections()` have been propagated outward: `estimate_truncation()` gained the full `dist_spec` delay families, `obs_opts()` observation model selection between Poisson and negative binomial, and the `likelihood` and `return_likelihood` settings that make prior-only fits and loo-compatible output possible. Hardcoded assumptions are being replaced by specifiable ones in the same motion — the truncation model's additive noise term was a fixed `sigma ~ normal(0, 1)` prior and is now a `dist_spec` argument.
◆ Prediction
Expect the remaining modelling functions to keep converging on the shared options interface, since the last two releases have each moved another function onto it. A new `estimate_dist()` for interval-censored linelist data suggests delay estimation is the area still gaining surface.
icesSAG
0.0ANALYTICS
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
◆ Current state
icesSAG is the R client for the ICES Stock Assessment Graphs database, used by fisheries scientists to retrieve and publish stock assessment summaries and figures. The 1.5.0 release repointed every function at a new API, replaced token authentication with JWT via icesConnect, and dropped file upload entirely. Upload returned in 1.6.2, now routing through icesDatsu to check file format and validate data before submission.
◆ Where it's heading
The package is consolidating onto the shared ices-tools stack rather than carrying its own machinery — authentication moved to icesConnect, validation to icesDatsu, and the icesVocab dependency was dropped once it was no longer needed. Alongside that, redundant graph functions were deprecated and caching was added to reduce load on the server. Releases are infrequent and driven by upstream API changes.
◆ Prediction
Expect the next release to follow whatever the ICES service or the sibling ices-tools packages change next, rather than introducing new analysis capability of its own.
Alternatives to EpiNow2 and icesSAG
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either EpiNow2 or icesSAG.
lineup2
lineup2 ships once every few years, and 2026's release is a logo and a core-count tweak.
stringi
stringi has spent two years on build hardening since its Unicode 15.1 reset.
OHPL
A 2017 chemometrics method frozen in place, visited only when CRAN changes its documentation rules.
fastplyr
A fast dplyr stand-in that keeps finding new places to skip work entirely.
trias
Belgium's invasive-species indicator toolkit is in steady refinement, one plotting edge case at a time.
See all EpiNow2 alternatives → · See all icesSAG alternatives →
Recent activity from EpiNow2 and icesSAG
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoEpiNow2estimate_truncation gains full delay and observation options
- 3mo agoicesSAGStock upload restored with pre-submission validation
- 6mo agoEpiNow2Unified return objects and shared accessors across all models ⚡
- 1y agoEpiNow2Patch for an upstream rstan issue
- 1y agoEpiNow2Accumulation for irregularly reported data; unified priors
- 1y agoEpiNow2Matern kernel spectral density fix and GP prior revert
- 1y agoicesSAGEvery function repointed at a new API, with JWT auth ⚡
- 1y agoEpiNow2Gaussian Process model improvements and explicit defaults
- 6y agoicesSAGlocal release 1.3-5
Frequently asked questions
What is the difference between EpiNow2 and icesSAG?
They serve adjacent needs but don't currently overlap on shipped themes. EpiNow2 and icesSAG are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is EpiNow2 better than icesSAG?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. EpiNow2 and icesSAG are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to EpiNow2?
Top EpiNow2 alternatives in Analytics are ranked by recent ship velocity. Browse the "EpiNow2 alternatives" section above for the current picks, or visit /alternatives/epinow2 for the full list with editorial commentary on each.
What are the best alternatives to icesSAG?
Top icesSAG alternatives in Analytics are ranked by recent ship velocity. Browse the "icesSAG alternatives" section above for the current picks, or visit /alternatives/icessag for the full list with editorial commentary on each.