tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
epiflows vs paleobuddy
A side-by-side editorial comparison of epiflows and paleobuddy — release velocity, themes, recent moves, and the top alternatives to consider.
epiflows vs paleobuddy: at a glance
What is epiflows?
epiflows has shipped four releases in eight years, none of which changed the code.
epiflows predicts the spread of infectious disease along population flows between locations, and it is effectively dormant. The whole visible history spans 2018 to 2026 in four entries: the first CRAN release, a Zenodo archival tag, a Roxygen patch whose notes state the functionality is unchanged, and a 2026 release replacing deprecated ggplot2 and tibble calls. No entry describes new epidemiological capability.
What is paleobuddy?
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
epiflows vs paleobuddy: editorial side-by-side
epiflows
0.0ANALYTICS
epiflows has shipped four releases in eight years, none of which changed the code.
◆ Current state
epiflows predicts the spread of infectious disease along population flows between locations, and it is effectively dormant. The whole visible history spans 2018 to 2026 in four entries: the first CRAN release, a Zenodo archival tag, a Roxygen patch whose notes state the functionality is unchanged, and a 2026 release replacing deprecated ggplot2 and tibble calls. No entry describes new epidemiological capability.
◆ Where it's heading
The package is being kept installable rather than developed. The one recent release is dependency maintenance contributed from outside, which is the pattern for RECON-era epidemiology packages that have outlived their original project funding. Two separate entries are both labelled version 0.2.1, so even the version history is not a reliable guide to what changed.
◆ Prediction
Any further releases will most likely be more deprecation cleanup to keep the package on CRAN; there is nothing in the record suggesting active development has resumed.
paleobuddy
0.0ANALYTICS
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
◆ Current state
paleobuddy simulates diversification, fossil records and phylogenetic trees, with rates that can be arbitrary functions of time — its founding idea, implemented through rexp.var() generalizing exponential and Weibull draws. The 1.1.0 release adds state-dependent speciation and extinction simulation at roughly MuHiSSE generality, and lets simulations stop at a target number of extant species instead of conditioning on time.
◆ Where it's heading
Releases track the maintainer's publications rather than a product cadence — 1.0.0 accompanied the MEE manuscript, 1.0.0.1 exists purely as a Zenodo citation anchor, and 1.1.0 is stated as going with a paper on SSE model accuracy for trees including fossil data. That framing sets the direction: the package grows whichever capability the next study needs to test. The stated SSE limits, no quantitative traits and no cladogenetic transitions, mark exactly where that boundary currently sits.
◆ Prediction
Quantitative traits and cladogenetic transitions are named as missing, which makes them the obvious next targets, though on this history the timing will follow a paper rather than a roadmap.
Alternatives to epiflows and paleobuddy
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either epiflows or paleobuddy.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all epiflows alternatives → · See all paleobuddy alternatives →
Recent activity from epiflows and paleobuddy
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agoepiflowsDeprecated ggplot2 and tibble calls replaced
- 1y agopaleobuddypaleobuddy 1.1.0 adds SSE trait-dependent simulation ⚡
- 3y agoepiflowsRoxygen patch for CRAN checks
- 3y agopaleobuddypaleobuddy 1.0.0.1: Zenodo citation release
- 4y agopaleobuddypaleobuddy 1.0.0: first release with time-varying rates
- 7y agoepiflowsFirst Zenodo archival tag
- 8y agoepiflowsFirst CRAN release
Frequently asked questions
What is the difference between epiflows and paleobuddy?
They serve adjacent needs but don't currently overlap on shipped themes. epiflows and paleobuddy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is epiflows better than paleobuddy?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. epiflows and paleobuddy are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to epiflows?
Top epiflows alternatives in Analytics are ranked by recent ship velocity. Browse the "epiflows alternatives" section above for the current picks, or visit /alternatives/epiflows-r for the full list with editorial commentary on each.
What are the best alternatives to paleobuddy?
Top paleobuddy alternatives in Analytics are ranked by recent ship velocity. Browse the "paleobuddy alternatives" section above for the current picks, or visit /alternatives/paleobuddy for the full list with editorial commentary on each.