STACAS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
Comparison · Analytics
eiaapi vs GeneNMF
A side-by-side editorial comparison of eiaapi and GeneNMF — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
eiaapi vs GeneNMF: at a glance
What is eiaapi?
A thin EIA energy-data client whose whole story is making bulk queries survive the API's limits.
eiaapi wraps the US Energy Information Administration API: eia_get() issues a single query, and eia_backfill() decomposes a large date range into chunks the API will actually serve. Three releases across two years cover the package's entire history, and the second and third both exist because of eia_backfill().
What is GeneNMF?
GeneNMF rebuilt how it derives meta-programs, changing every result it had produced.
GeneNMF applies non-negative matrix factorization to single-cell expression data to find gene programs, then consolidates programs recurring across samples into meta-programs. Version 0.6.0 replaced the consolidation method: instead of reducing each program to a gene set and taking a consensus, it retains full gene weight vectors and compares them by cosine similarity. Later releases have built reporting and control around that core — a metaprogram composition matrix showing which samples contributed, custom signature databases for enrichment testing, and the ability to drop meta-programs from results.
eiaapi vs GeneNMF: editorial side-by-side
eiaapi
0.0ANALYTICS
A thin EIA energy-data client whose whole story is making bulk queries survive the API's limits.
◆ Current state
eiaapi wraps the US Energy Information Administration API: eia_get() issues a single query, and eia_backfill() decomposes a large date range into chunks the API will actually serve. Three releases across two years cover the package's entire history, and the second and third both exist because of eia_backfill().
◆ Where it's heading
The package's development is a single problem being worked: pulling more data than one request allows. Version 0.1.2 introduced eia_backfill() for exactly that, and 0.2.0 fixed it for non-hourly frequencies by adding the frequency and data arguments so it matches eia_get()'s interface and by reworking Date handling. That convergence of the two functions' signatures is the visible design direction — one query idiom regardless of range size.
◆ Prediction
With the two functions now taking aligned arguments, further work most plausibly extends coverage to more EIA endpoints or response shapes. The entries name no specific target.
GeneNMF
0.0ANALYTICS
GeneNMF rebuilt how it derives meta-programs, changing every result it had produced.
◆ Current state
GeneNMF applies non-negative matrix factorization to single-cell expression data to find gene programs, then consolidates programs recurring across samples into meta-programs. Version 0.6.0 replaced the consolidation method: instead of reducing each program to a gene set and taking a consensus, it retains full gene weight vectors and compares them by cosine similarity. Later releases have built reporting and control around that core — a metaprogram composition matrix showing which samples contributed, custom signature databases for enrichment testing, and the ability to drop meta-programs from results.
◆ Where it's heading
The package is moving from producing meta-programs to letting users interrogate and constrain how they were formed. Composition matrices, the drop function and downsampled similarity heatmaps all serve inspection rather than derivation. The parameters added alongside the 0.6.0 rewrite — specificity weighting, cumulative weight thresholds, confidence defined as the fraction of programs containing a gene — turn what were fixed internal choices into stated, tunable ones.
◆ Prediction
Recent releases have been fixes and compatibility work rather than method changes, so the core approach appears settled. The dependency on an RcppML version not on CRAN is the loose end most likely to force the next release.
Alternatives to eiaapi and GeneNMF
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either eiaapi or GeneNMF.
ggtrace
A debugger for ggplot2's internals, hardening its grip as the internals it traces keep moving.
kde1d
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
svines
Stationary vine copulas for time series, released in lockstep with the rest of Nagler's vine stack.
gghighlight
A single-purpose ggplot2 extension that has spent six years tracking ggplot2 instead of growing.
rtrek
A Star Trek data package that became a Memory Alpha web client and has been patching scrapers ever since.
See all eiaapi alternatives → · See all GeneNMF alternatives →
Recent activity from eiaapi and GeneNMF
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoGeneNMFSingle-sample runs fixed; gene weight definition refined
- 1y agoeiaapieia_backfill() works for non-hourly frequencies
- 1y agoGeneNMFMetaprogram composition exposed and custom signature DBs supported
- 1y agoGeneNMFSimilarity heatmap downsampling and meta-program removal
- 2y agoGeneNMFMeta-programs rebuilt on gene weight vectors and cosine similarity ⚡
- 2y agoGeneNMFFirst stable release published to CRAN
- 3y agoeiaapieia_backfill() added for large data queries
- 3y agoeiaapiInitial release with eia_get() API query function
Frequently asked questions
What is the difference between eiaapi and GeneNMF?
Both compete on the same themes — r-package — within Analytics. eiaapi and GeneNMF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is eiaapi better than GeneNMF?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. eiaapi and GeneNMF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to eiaapi?
Top eiaapi alternatives in Analytics are ranked by recent ship velocity. Browse the "eiaapi alternatives" section above for the current picks, or visit /alternatives/eiaapi for the full list with editorial commentary on each.
What are the best alternatives to GeneNMF?
Top GeneNMF alternatives in Analytics are ranked by recent ship velocity. Browse the "GeneNMF alternatives" section above for the current picks, or visit /alternatives/genenmf for the full list with editorial commentary on each.