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Comparison · Analytics
ecodive vs rmediation
A side-by-side editorial comparison of ecodive and rmediation — release velocity, themes, recent moves, and the top alternatives to consider.
ecodive vs rmediation: at a glance
What is ecodive?
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
ecodive computes alpha and beta diversity metrics for ecological and microbiome count data, including phylogenetic measures like Faith's PD and the UniFrac family. The 2.0.0 rewrite expanded it from a handful of metrics to roughly fourteen alpha and thirty beta measures while flipping the expected input orientation to samples-as-rows. Subsequent releases have been spent settling the normalisation interface that expansion exposed.
What is rmediation?
RMediation shipped a three-normal CDF, then found it was silently wrong.
RMediation is a long-standing CRAN package for confidence intervals on mediated effects, now built on an S7 class hierarchy. Over eight weeks it added ProductNormal3 for serial indirect effects of the form a1*a2*b, folded the engine into the existing pprodnormal naming family, and then replaced that engine outright after finding it returned wrong probabilities without warning. The dev branch is at 1.7.0; CRAN still serves 1.6.1.
ecodive vs rmediation: editorial side-by-side
ecodive
0.0ANALYTICS
ecodive rebuilt itself into a broad diversity-metric library, breaking as it went
◆ Current state
ecodive computes alpha and beta diversity metrics for ecological and microbiome count data, including phylogenetic measures like Faith's PD and the UniFrac family. The 2.0.0 rewrite expanded it from a handful of metrics to roughly fourteen alpha and thirty beta measures while flipping the expected input orientation to samples-as-rows. Subsequent releases have been spent settling the normalisation interface that expansion exposed.
◆ Where it's heading
This is a package that made its breaking changes deliberately and in a cluster. After 2.0.0 reoriented input and removed the weighted parameter, 2.1.0 superseded rescale with norm, and 2.2.6 changed norm's default from percent to none and removed it from some beta functions entirely. That last one matters more than it reads: normalisation defaults silently change the numbers a metric returns, and the direction is toward making the user state their choice rather than inheriting one.
◆ Prediction
With the metric surface broad and the normalisation interface now explicit, expect the next releases to stabilise — documentation and edge-case handling around CLR and rarefaction rather than another interface break.
rmediation
3.8ANALYTICS
RMediation shipped a three-normal CDF, then found it was silently wrong.
◆ Current state
RMediation is a long-standing CRAN package for confidence intervals on mediated effects, now built on an S7 class hierarchy. Over eight weeks it added ProductNormal3 for serial indirect effects of the form a1*a2*b, folded the engine into the existing pprodnormal naming family, and then replaced that engine outright after finding it returned wrong probabilities without warning. The dev branch is at 1.7.0; CRAN still serves 1.6.1.
◆ Where it's heading
The package is moving from a hand-rolled numerical layer to one that checks itself: the new default integrator escalates its node count until successive rules agree, warns when it hits the cap instead of returning a number, and exposes a diagnostics argument for the convergence estimate. The correctness fix went to dev ahead of the CRAN window rather than being held for it, which suggests wrong-answer bugs are treated as release-blocking regardless of cadence. Serial mediation is where the new surface area is concentrated.
◆ Prediction
1.7.0 exists specifically to land before CRAN's 2026-08-21 update window, so the next move is a CRAN submission promoting it to main; whether hcubature survives past that as a cross-check option is the open question.
Alternatives to ecodive and rmediation
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ecodive or rmediation.
gcube
gcube's recent releases are all packaging metadata, not simulation code
cubist
The R port of Quinlan's Cubist gets reproducibility fixes, not new modelling
ggstats
ggstats keeps widening what a coefficient or Likert plot can be
simStateSpace
State-space data simulation for R, filled in one function at a time
rollama
rollama turns a local-LLM wrapper into an instrument for reproducible annotation
See all ecodive alternatives → · See all rmediation alternatives →
Recent activity from ecodive and rmediation
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 12h agormediationv1.7.0 — pprodnormal3() correctness fix ⚡
- 1mo agormediationp_prod3() renamed into the pprodnormal family
- 1mo agormediationProductNormal3: exact CDF for a product of three normals ⚡
- 2mo agormediationmedfit reaches CRAN; Remotes pointer dropped
- 4mo agoecodiveNormalisation now defaults to none, with CLR zero warnings
- 7mo agoecodiveecodive 2.2.2
- 10mo agoecodiverescale superseded by norm; crash fixes after the 2.0.0 rewrite
- 10mo agoecodive2.0.0 expands to ~14 alpha and ~30 beta diversity metrics ⚡
Frequently asked questions
What is the difference between ecodive and rmediation?
They serve adjacent needs but don't currently overlap on shipped themes. rmediation is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ecodive better than rmediation?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rmediation is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ecodive?
Top ecodive alternatives in Analytics are ranked by recent ship velocity. Browse the "ecodive alternatives" section above for the current picks, or visit /alternatives/ecodive for the full list with editorial commentary on each.
What are the best alternatives to rmediation?
Top rmediation alternatives in Analytics are ranked by recent ship velocity. Browse the "rmediation alternatives" section above for the current picks, or visit /alternatives/rmediation for the full list with editorial commentary on each.