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Comparison · Infra & APIs

driveR vs jstable

A side-by-side editorial comparison of driveR and jstable — release velocity, themes, recent moves, and the top alternatives to consider.

Shared themes:r-package

driveR vs jstable: at a glance

FeaturedriveRjstable
SectorInfra & APIsInfra & APIs
Velocity score0.00.0
Sparks · 30d00
Top themescancer-genomics, bioinformatics, r-package, driver-genesbiostatistics, r-package, clinical-research, survey-weighted
Last editorial update1h ago1h ago
WebsiteVisit →Visit →

What is driveR?

A cancer driver prioritization package that ships rarely and mostly to stay installable

driveR prioritizes cancer driver genes from somatic variant and copy number data, combining coding impact scores, noncoding impact, copy number alteration scores and hotspot annotations into a multi-task learning classification model. Version 0.5.0 added gene-level SCNA data frames as an accepted input to create_features_df(), with an example table shipped alongside, widening the entry point beyond the segment-level format. The same release moved org.Hs.eg.db and both hg19 and hg38 TxDb annotation packages from Imports to Suggests under new CRAN policy, with dependent functions now raising an error when they are absent rather than silently degrading.

Read the full driveR trajectory →

What is jstable?

A clinical table generator paying down years of edge cases in survey-weighted models

jstable turns regression and survival models into the formatted tables medical papers publish, wrapping coxph, glm, geeglm, lmer and their survey-weighted counterparts. The recent line is almost entirely correction work, concentrated in two places: the .display family and the TableSubgroup family. Version 1.3.25 alone fixed quasibinomial support for survey-weighted logistic regression, automatic factor-to-numeric outcome conversion for svyglm, weighted-versus-original sample counts in the n row, data.table input handling, and Overall column labelling.

Read the full jstable trajectory →

driveR vs jstable: editorial side-by-side

D
driveR
INFRA · APIS
0.0

A cancer driver prioritization package that ships rarely and mostly to stay installable

◆ Current state

driveR prioritizes cancer driver genes from somatic variant and copy number data, combining coding impact scores, noncoding impact, copy number alteration scores and hotspot annotations into a multi-task learning classification model. Version 0.5.0 added gene-level SCNA data frames as an accepted input to create_features_df(), with an example table shipped alongside, widening the entry point beyond the segment-level format. The same release moved org.Hs.eg.db and both hg19 and hg38 TxDb annotation packages from Imports to Suggests under new CRAN policy, with dependent functions now raising an error when they are absent rather than silently degrading.

◆ Where it's heading

Releases are infrequent and split cleanly between capability and correction. GRCh38 support arrived in 0.4.0 and cancer-type-specific thresholds were refreshed in 0.3.0, while the 0.2.x pair fixed scoring errors serious enough to require retraining: a column name mismatch meant the SCNA score was not being computed at all, and MCR table coordinates needed converting from hg18 to hg19. Both times the bundled classification model and thresholds were rebuilt as a consequence. Since 0.4.0 the changes have been input handling and packaging rather than method.

◆ Prediction

The move of the annotation databases to Suggests suggests a leaner install is the current priority; the entries give no indication of planned model or scoring changes.

J
jstable
INFRA · APIS
0.0

A clinical table generator paying down years of edge cases in survey-weighted models

◆ Current state

jstable turns regression and survival models into the formatted tables medical papers publish, wrapping coxph, glm, geeglm, lmer and their survey-weighted counterparts. The recent line is almost entirely correction work, concentrated in two places: the .display family and the TableSubgroup family. Version 1.3.25 alone fixed quasibinomial support for survey-weighted logistic regression, automatic factor-to-numeric outcome conversion for svyglm, weighted-versus-original sample counts in the n row, data.table input handling, and Overall column labelling.

◆ Where it's heading

Each CRAN release bundles several GitHub patch versions, so the notes read as rolled-up fix lists rather than feature announcements. The substantive thread is pcut.univariate, introduced across seven display functions in 1.3.11 to allow multivariable analysis restricted to significant variables, and repaired repeatedly since as it collided with interaction terms, single-variable selections, clustered models and data.table inputs. The survey-weighted path is the other recurring source: counts, labels and family handling that worked for unweighted data kept failing once weights were involved.

◆ Prediction

Expect further patches in the survey-weighted subgroup functions, since 1.3.25 fixed four separate issues there and each recent release has surfaced more in the same area.

Alternatives to driveR and jstable

Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either driveR or jstable.

See all driveR alternatives → · See all jstable alternatives →

Recent activity from driveR and jstable

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 4mo agojstableSurvey-weighted logistic regression and sample counts corrected
  2. 6mo agojstableCompeting-risk counts drawn from original rather than transformed data
  3. 7mo agodriveRGene-level copy number input accepted, annotation packages made optional
  4. 9mo agojstableMulti-state Cox models detected without a manual flag
  5. 10mo agojstableWide fix pass across the display functions
  6. 0y agojstableCrude p-values computed from raw data via data_for_univariate
  7. 1y agojstableSignificance-filtered multivariable analysis added across seven functions
  8. 3y agodriveRCRAN documentation error fixed
  9. 4y agodriveRGRCh38 genome build supported
  10. 4y agodriveRCancer-type-specific thresholds updated
  11. 5y agodriveRMCR coordinates converted to hg19 and the model retrained
  12. 5y agodriveRCopy number score was never being computed, model rebuilt

Frequently asked questions

What is the difference between driveR and jstable?

Both compete on the same themes — r-package — within Infra & APIs. driveR and jstable are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is driveR better than jstable?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. driveR and jstable are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.

What are the best alternatives to driveR?

Top driveR alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "driveR alternatives" section above for the current picks, or visit /alternatives/driver for the full list with editorial commentary on each.

What are the best alternatives to jstable?

Top jstable alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jstable alternatives" section above for the current picks, or visit /alternatives/jstable for the full list with editorial commentary on each.