EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
A side-by-side editorial comparison of deeptime and rjdqa — release velocity, themes, recent moves, and the top alternatives to consider.
A geologic-time plotting layer that outgrew time axes and became a geology rendering toolkit.
deeptime extends ggplot2 with geological time scales, radial deep-time coordinates and phylogeny-aware geoms, and since 2.0.0 it also renders standardized FGDC/USGS geologic patterns as ggplot2 fills. The current 2.4.0 release adds geom_text_clade() for labeling clades on radial phylogenies and repairs long-standing coord_trans_xy() and scale-placement edge cases.
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
rjdqa builds quality assessment dashboards for seasonal adjustment models produced by JDemetra+, aimed at official statisticians reviewing adjusted series. Essentially all development goes into two functions, simple_dashboard() and its denser variant simple_dashboard2(). Version 0.1.6 adds parameters to append observations to the forecast and to control whether the residual trading-days test is printed, defaulting to monthly series only, plus outlier table layout work and user-defined calendar regressor support in sc_dashboard().
deeptime extends ggplot2 with geological time scales, radial deep-time coordinates and phylogeny-aware geoms, and since 2.0.0 it also renders standardized FGDC/USGS geologic patterns as ggplot2 fills. The current 2.4.0 release adds geom_text_clade() for labeling clades on radial phylogenies and repairs long-standing coord_trans_xy() and scale-placement edge cases.
The package is converging on two jobs: being the canonical R renderer for stratigraphic drawing conventions, and keeping pace with ggplot2's own churn. A sustained deprecation program — gggeo_scale(), coord_geo_polar(), getScaleData(), now disparity_through_time() — is trimming the surface down to coord_geo(), coord_geo_radial() and the pattern functions. Roughly half of each recent release is ggplot2 4.0 compatibility work.
Expect disparity_through_time() and coord_geo_polar() to be removed outright in the next major version, and further geoms aimed at annotating radial phylogenies.
rjdqa builds quality assessment dashboards for seasonal adjustment models produced by JDemetra+, aimed at official statisticians reviewing adjusted series. Essentially all development goes into two functions, simple_dashboard() and its denser variant simple_dashboard2(). Version 0.1.6 adds parameters to append observations to the forecast and to control whether the residual trading-days test is printed, defaulting to monthly series only, plus outlier table layout work and user-defined calendar regressor support in sc_dashboard().
The package has converged on a single deliverable and is tuning it against reviewer practice. Each release adds a parameter that lets the analyst include or exclude one element of the dashboard, or adjusts how densely information is packed into the fixed space of the layout. The td_effect default — print the test only for monthly series — is characteristic: the knowledge about when a diagnostic is meaningful is being encoded into the tool rather than left to the reader.
The pattern of adding one toggle per diagnostic per release points at the same thing again, most likely another test given a conditional default, rather than a new dashboard function alongside the two that exist.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either deeptime or rjdqa.
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist is in pure preservation mode — one build fix every few years.
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all deeptime alternatives → · See all rjdqa alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
They serve adjacent needs but don't currently overlap on shipped themes. deeptime and rjdqa are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. deeptime and rjdqa are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top deeptime alternatives in Analytics are ranked by recent ship velocity. Browse the "deeptime alternatives" section above for the current picks, or visit /alternatives/deeptime-r for the full list with editorial commentary on each.
Top rjdqa alternatives in Analytics are ranked by recent ship velocity. Browse the "rjdqa alternatives" section above for the current picks, or visit /alternatives/rjdqa-r for the full list with editorial commentary on each.