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IP address vectors for R that hit 1.0 and then went quiet.
Comparison · Infra & APIs
cvms vs driveR
A side-by-side editorial comparison of cvms and driveR — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
cvms vs driveR: at a glance
What is cvms?
A cross-validation package whose real development has moved to its plotting function
cvms runs repeated cross-validation over model formulas and reports comparable metrics. The 2.0.0 release was a breaking correctness fix: every function accepting fold_cols mismatched training and testing data when fold indices were non-sequential, did not start at 1, or were strings, because the iteration index was compared against the raw fold value rather than its factor level index. 2.0.1 restored coefficient extraction for nnet::multinom and mixed models by supplying an environment containing the training data, and followed lme4's move of findbars() into the reformulas package.
What is driveR?
A cancer driver prioritization package that ships rarely and mostly to stay installable
driveR prioritizes cancer driver genes from somatic variant and copy number data, combining coding impact scores, noncoding impact, copy number alteration scores and hotspot annotations into a multi-task learning classification model. Version 0.5.0 added gene-level SCNA data frames as an accepted input to create_features_df(), with an example table shipped alongside, widening the entry point beyond the segment-level format. The same release moved org.Hs.eg.db and both hg19 and hg38 TxDb annotation packages from Imports to Suggests under new CRAN policy, with dependent functions now raising an error when they are absent rather than silently degrading.
cvms vs driveR: editorial side-by-side
cvms
0.0INFRA · APIS
A cross-validation package whose real development has moved to its plotting function
◆ Current state
cvms runs repeated cross-validation over model formulas and reports comparable metrics. The 2.0.0 release was a breaking correctness fix: every function accepting fold_cols mismatched training and testing data when fold indices were non-sequential, did not start at 1, or were strings, because the iteration index was compared against the raw fold value rather than its factor level index. 2.0.1 restored coefficient extraction for nnet::multinom and mixed models by supplying an environment containing the training data, and followed lme4's move of findbars() into the reformulas package.
◆ Where it's heading
Two threads run in parallel and only one is about cross-validation. The plotting function plot_confusion_matrix() has absorbed most feature work since 1.5.0 - custom gradient palettes, intensity limits, per-tile settings, dynamic font colors keyed to value thresholds, and arguments that accept functions rather than constants - to the point where a companion web application exists for using it without code. The cross-validation core, by contrast, sees maintenance: upstream compatibility fixes for pROC, ggnewscale and ggplot2, and the fold-matching correction that finally forced a major version.
◆ Prediction
Expect continued option growth in the confusion matrix plotting surface, since that is where nearly every release since 1.5.0 has spent its changes, with core cross-validation changes arriving only as upstream packages force them.
driveR
0.0INFRA · APIS
A cancer driver prioritization package that ships rarely and mostly to stay installable
◆ Current state
driveR prioritizes cancer driver genes from somatic variant and copy number data, combining coding impact scores, noncoding impact, copy number alteration scores and hotspot annotations into a multi-task learning classification model. Version 0.5.0 added gene-level SCNA data frames as an accepted input to create_features_df(), with an example table shipped alongside, widening the entry point beyond the segment-level format. The same release moved org.Hs.eg.db and both hg19 and hg38 TxDb annotation packages from Imports to Suggests under new CRAN policy, with dependent functions now raising an error when they are absent rather than silently degrading.
◆ Where it's heading
Releases are infrequent and split cleanly between capability and correction. GRCh38 support arrived in 0.4.0 and cancer-type-specific thresholds were refreshed in 0.3.0, while the 0.2.x pair fixed scoring errors serious enough to require retraining: a column name mismatch meant the SCNA score was not being computed at all, and MCR table coordinates needed converting from hg18 to hg19. Both times the bundled classification model and thresholds were rebuilt as a consequence. Since 0.4.0 the changes have been input handling and packaging rather than method.
◆ Prediction
The move of the annotation databases to Suggests suggests a leaner install is the current priority; the entries give no indication of planned model or scoring changes.
Alternatives to cvms and driveR
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cvms or driveR.
ltertools
A column-key toolkit for stitching decades of ecological field data into one table.
finnts
Microsoft's automated forecasting framework, still mostly a one-maintainer effort.
BayLum
Bayesian luminescence dating that finally replaced its folder-structure input format.
daedalus
An epidemic-economic model teaching its interventions to react to the outbreak itself.
bkmrhat
A parallel-chain helper for bkmr that has settled into pure upkeep.
Recent activity from cvms and driveR
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agocvmsCoefficient extraction restored for multinom and mixed models
- 7mo agodriveRGene-level copy number input accepted, annotation packages made optional
- 9mo agocvmsBreaking fix for mismatched folds with non-sequential fold IDs
- 11mo agocvmsTest compatibility with pROC 1.19 and a deprecation warning fix
- 1y agocvmsConfusion matrix fonts and colors can now be computed from the values
- 1y agocvmsTile intensity by row or column percentages
- 1y agocvmsMultinom coefficient extraction fix after a parameters update
- 3y agodriveRCRAN documentation error fixed
- 4y agodriveRGRCh38 genome build supported
- 4y agodriveRCancer-type-specific thresholds updated
- 5y agodriveRMCR coordinates converted to hg19 and the model retrained
- 5y agodriveRCopy number score was never being computed, model rebuilt
Frequently asked questions
What is the difference between cvms and driveR?
Both compete on the same themes — r-package — within Infra & APIs. cvms and driveR are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cvms better than driveR?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cvms and driveR are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to cvms?
Top cvms alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "cvms alternatives" section above for the current picks, or visit /alternatives/cvms for the full list with editorial commentary on each.
What are the best alternatives to driveR?
Top driveR alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "driveR alternatives" section above for the current picks, or visit /alternatives/driver for the full list with editorial commentary on each.