STACAS
Single-cell batch correction that learned to use cell labels, then spent three releases chasing Seurat.
Comparison · Analytics
collinear vs sdsfun
A side-by-side editorial comparison of collinear and sdsfun — release velocity, themes, recent moves, and the top alternatives to consider.
collinear vs sdsfun: at a glance
What is collinear?
collinear has broken its API twice to stop making the user pick thresholds.
collinear removes multicollinearity from predictor sets through pairwise correlation and VIF filtering, with a preference order deciding which variable survives each conflict. Two major versions in thirteen months each rewrote the interface: 2.0.0 extended every function to any combination of categorical and numeric responses and predictors, and 3.0.0 moved to multiple responses, restructured the output into classed objects, and made both filtering thresholds adaptive by default. Version 3.0.1 is the first release since that is purely repair.
What is sdsfun?
A spatial-statistics utility package exists to be depended on, and is built accordingly.
sdsfun collects spatial data science utilities — neighbour lists, spatial constrained clustering, discretization, dummy variable generation, geographical detector statistics and projection helpers — with the computationally heavy parts implemented in Rcpp. It was assembled quickly across late 2024, adding a function set roughly every three weeks, and has slowed since to a couple of releases a year. The most recent work is corrective: no longer initializing the RNG state at load, fixing matrix inputs misread as vectors, and clearing an Armadillo deprecation.
collinear vs sdsfun: editorial side-by-side
collinear
0.0ANALYTICS
collinear has broken its API twice to stop making the user pick thresholds.
◆ Current state
collinear removes multicollinearity from predictor sets through pairwise correlation and VIF filtering, with a preference order deciding which variable survives each conflict. Two major versions in thirteen months each rewrote the interface: 2.0.0 extended every function to any combination of categorical and numeric responses and predictors, and 3.0.0 moved to multiple responses, restructured the output into classed objects, and made both filtering thresholds adaptive by default. Version 3.0.1 is the first release since that is purely repair.
◆ Where it's heading
The through-line is removing decisions the user was never well placed to make. Preference-order functions were renamed twice — first onto a metric-and-model scheme in 2.0.0, then onto a response-type scheme in 3.0.0 — and f_auto() picks one when none is given; target encoding went from automatic to opt-in; max_cor and max_vif now default to NULL and trigger a data-driven threshold derived from the 75th percentile of pairwise correlations through a sigmoid and a fitted correlation-to-VIF mapping. Each change is defensible and each one broke callers, which is the cost of this approach.
◆ Prediction
3.0.1 moved the example datasets out into a separate spatialData package and fixed four crashes rather than adding anything, so the next release is most likely more consolidation on the 3.0 surface than a fourth interface.
sdsfun
0.0ANALYTICS
A spatial-statistics utility package exists to be depended on, and is built accordingly.
◆ Current state
sdsfun collects spatial data science utilities — neighbour lists, spatial constrained clustering, discretization, dummy variable generation, geographical detector statistics and projection helpers — with the computationally heavy parts implemented in Rcpp. It was assembled quickly across late 2024, adding a function set roughly every three weeks, and has slowed since to a couple of releases a year. The most recent work is corrective: no longer initializing the RNG state at load, fixing matrix inputs misread as vectors, and clearing an Armadillo deprecation.
◆ Where it's heading
This is infrastructure for a family of packages rather than an end-user tool, and the changelog says so directly — functions were added to support gdverse and sesp, and moran_test was migrated in from geocomplexity. That migration pattern is the defining move: capability consolidates here so the downstream packages can share it instead of each carrying its own copy. Growth has slowed as that consolidation completed, leaving correctness and dependency upkeep.
◆ Prediction
Given the package moves when its dependents need something, the next release most likely brings in another shared function or responds to a downstream requirement rather than following its own plan. Armadillo and CRAN check changes remain the reliable source of maintenance work.
Alternatives to collinear and sdsfun
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either collinear or sdsfun.
ggtrace
A debugger for ggplot2's internals, hardening its grip as the internals it traces keep moving.
kde1d
A univariate density estimator that added zero-inflated data and reopened its C++ API to do it.
svines
Stationary vine copulas for time series, released in lockstep with the rest of Nagler's vine stack.
gghighlight
A single-purpose ggplot2 extension that has spent six years tracking ggplot2 instead of growing.
rtrek
A Star Trek data package that became a Memory Alpha web client and has been patching scrapers ever since.
See all collinear alternatives → · See all sdsfun alternatives →
Recent activity from collinear and sdsfun
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agocollinearNamespace, NA and sf fixes; example data moves to spatialData
- 8mo agocollinearAdaptive thresholds, multi-response support and a new output class ⚡
- 10mo agosdsfunPackage load stops touching the RNG state
- 1y agosdsfunUnified partial correlation testing and head/tails discretization
- 1y agosdsfunMissing-value handling added to linear trend removal
- 1y agosdsfunCovariate-based detrending and long-to-matrix spatial reshaping
- 1y agosdsfunSpatially constrained hierarchical clustering and SPADE estimation
- 1y agosdsfunFast geodetector q-value estimator added
- 1y agocollinearCategorical responses, f_auto() defaults and future-based parallelism ⚡
Frequently asked questions
What is the difference between collinear and sdsfun?
They serve adjacent needs but don't currently overlap on shipped themes. collinear and sdsfun are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is collinear better than sdsfun?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. collinear and sdsfun are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to collinear?
Top collinear alternatives in Analytics are ranked by recent ship velocity. Browse the "collinear alternatives" section above for the current picks, or visit /alternatives/collinear for the full list with editorial commentary on each.
What are the best alternatives to sdsfun?
Top sdsfun alternatives in Analytics are ranked by recent ship velocity. Browse the "sdsfun alternatives" section above for the current picks, or visit /alternatives/sdsfun for the full list with editorial commentary on each.