paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
A side-by-side editorial comparison of citeme and seriation — release velocity, themes, recent moves, and the top alternatives to consider.
Citation metadata machinery breaks out of INBO's checklist package to stand on its own.
citeme handles citation metadata for research software and organisations — building citation files, validating ORCIDs, RORs, licenses and URLs, and prompting for the pieces interactively. It was extracted from the checklist package in 0.1.0 and has spent the four releases since fleshing out organisational roles, most visibly publishers.
seriation stopped shipping algorithms and started shipping a way to pick between them.
seriation finds meaningful orderings for matrices, distance objects and dendrograms, and carries a large registry of methods from classic combinatorial criteria to t-SNE and UMAP embeddings. The 1.5.0 release added a layer above that registry — seriate_best(), seriate_rep() and seriate_improve() — which run randomized methods repeatedly, in parallel, and keep the best result. Recent work is definitional and numeric rather than additive: 1.5.8 corrects the linear seriation criterion to match Hubert and Schultz's original 1976 definition.
citeme handles citation metadata for research software and organisations — building citation files, validating ORCIDs, RORs, licenses and URLs, and prompting for the pieces interactively. It was extracted from the checklist package in 0.1.0 and has spent the four releases since fleshing out organisational roles, most visibly publishers.
Development is running in tight monthly increments along two tracks: modelling who is attached to a piece of research software, and smoothing the interactive prompts that collect it. The publisher role added in 0.1.1 propagated through validation, community detection and YAML handling over the next two releases, which is how this package tends to land a concept — introduce the class field, then follow it everywhere it needs to reach.
Expect the interactive ask_* family to keep growing alongside whatever metadata field is being modelled next, and further alignment with the checklist package it was carved out of.
seriation finds meaningful orderings for matrices, distance objects and dendrograms, and carries a large registry of methods from classic combinatorial criteria to t-SNE and UMAP embeddings. The 1.5.0 release added a layer above that registry — seriate_best(), seriate_rep() and seriate_improve() — which run randomized methods repeatedly, in parallel, and keep the best result. Recent work is definitional and numeric rather than additive: 1.5.8 corrects the linear seriation criterion to match Hubert and Schultz's original 1976 definition.
The package has shifted from breadth to judgment. Through 1.3.x the additions were new methods; from 1.5.0 the registry started carrying metadata about the methods — whether they are randomized, what criterion they optimize — so the package could choose and evaluate on the user's behalf. The 1.5.6 replacement of FORTRAN with C for BEA and ME points the same way, reducing the legacy surface underneath that machinery.
Further criterion audits are the likeliest next move, since 1.5.8 shows a published definition being reconciled against the implementation and the registry now records what each method optimizes. Expect corrections rather than new seriation algorithms.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either citeme or seriation.
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors keeps making uncertainty print the way each scientific field expects.
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls has not changed its statistics since 2016 — only its website, twice.
grex is a lookup table with a version number — it ships when the annotation moves.
See all citeme alternatives → · See all seriation alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
Both compete on the same themes — r-package — within Analytics. citeme and seriation are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. citeme and seriation are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top citeme alternatives in Analytics are ranked by recent ship velocity. Browse the "citeme alternatives" section above for the current picks, or visit /alternatives/citeme-r for the full list with editorial commentary on each.
Top seriation alternatives in Analytics are ranked by recent ship velocity. Browse the "seriation alternatives" section above for the current picks, or visit /alternatives/seriation-r for the full list with editorial commentary on each.