paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
cheapr vs EvoPhylo
A side-by-side editorial comparison of cheapr and EvoPhylo — release velocity, themes, recent moves, and the top alternatives to consider.
cheapr vs EvoPhylo: at a glance
What is cheapr?
cheapr turned multi-threaded, and its next stop is a C++20 public API.
cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.
What is EvoPhylo?
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
cheapr vs EvoPhylo: editorial side-by-side
cheapr
0.0ANALYTICS
cheapr turned multi-threaded, and its next stop is a C++20 public API.
◆ Current state
cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.
◆ Where it's heading
Two arcs run at once. The visible one is parallelism: what began as single-threaded C shortcuts is becoming a threaded compute layer, and the notes state the C/C++ API is mid-rewrite with a stable form promised at 2.0.0 behind a C++20 requirement. The quieter one is R C API compliance — 1.5.1 removed R_MissingArg, R_UnboundValue, Rf_findVar and Rf_findVarinFrame, the non-API entry points being closed off upstream. The 1.5.x patches since are narrow crash fixes, which reads as consolidation before the 2.0.0 break.
◆ Prediction
Expect 2.0.0 to land the stable C/C++ API behind a C++20 toolchain floor, with more of the existing function surface threaded in the interim. The package has announced both moves in its own release notes.
EvoPhylo
0.0ANALYTICS
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
◆ Current state
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
◆ Where it's heading
The package's substantive arc ended with the 0.3.2 publication release, which arrived with peer-review revisions and three first-time contributors — the shape of software built to accompany a paper. What follows is thin: a MrBayes plotting correction in 0.3.3, then a two-year gap and a release with no described contents. The August 2025 entry may contain real work, but the notes give a reader nothing to judge.
◆ Prediction
Without release notes on the latest version there is no observable basis for predicting the next move; the two-year gap before it suggests activity tied to specific research needs rather than a maintenance cadence.
Alternatives to cheapr and EvoPhylo
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cheapr or EvoPhylo.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all cheapr alternatives → · See all EvoPhylo alternatives →
Recent activity from cheapr and EvoPhylo
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agocheaprrep_len_ crash on shrinking lengths fixed
- 4mo agocheaprNon-API R internals removed
- 4mo agocheaprParallelised math, thread control, and a C API rewrite ⚡
- 11mo agoEvoPhyloEvoPhylo v. 0.3.5
- 1y agocheaprSubsetting speedups; sset_col negative-index crash fixed
- 1y agocheaprdf_modify added; attribute helpers renamed for intent
- 1y agocheaprcounts and str_coalesce added; reconstruct renamed to rebuild
- 3y agoEvoPhyloEvoPhylo 0.3.3 fixes back-rate plots for MrBayes
- 3y agoEvoPhyloEvoPhylo 0.3.2 adds BEAST2 support for FBD and rates
Frequently asked questions
What is the difference between cheapr and EvoPhylo?
They serve adjacent needs but don't currently overlap on shipped themes. cheapr and EvoPhylo are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cheapr better than EvoPhylo?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cheapr and EvoPhylo are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cheapr?
Top cheapr alternatives in Analytics are ranked by recent ship velocity. Browse the "cheapr alternatives" section above for the current picks, or visit /alternatives/cheapr-r for the full list with editorial commentary on each.
What are the best alternatives to EvoPhylo?
Top EvoPhylo alternatives in Analytics are ranked by recent ship velocity. Browse the "EvoPhylo alternatives" section above for the current picks, or visit /alternatives/evophylo for the full list with editorial commentary on each.