n2kanalysis
n2kanalysis has spent eight years wiring INLA models to an S3 bucket.
Comparison · Analytics
cheapr vs EpiNow2
A side-by-side editorial comparison of cheapr and EpiNow2 — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
cheapr vs EpiNow2: at a glance
What is cheapr?
cheapr turned multi-threaded, and its next stop is a C++20 public API.
cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.
What is EpiNow2?
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
cheapr vs EpiNow2: editorial side-by-side
cheapr
0.0ANALYTICS
cheapr turned multi-threaded, and its next stop is a C++20 public API.
◆ Current state
cheapr supplies lower-overhead replacements for base R's data manipulation primitives — subsetting, recycling, concatenation, attribute handling, data frame construction. Through 2025 it grew function by function: sset_df/sset_row/sset_col, list_as_df, cheapr_c, counts, str_coalesce, df_modify. The 1.5.0 release in April 2026 changed the nature of the package, adding parallelised math functions, user-settable thread counts, multi-threaded vector initialisers, and a SIMD-parallelised if_else_, with threading on by default at two threads.
◆ Where it's heading
Two arcs run at once. The visible one is parallelism: what began as single-threaded C shortcuts is becoming a threaded compute layer, and the notes state the C/C++ API is mid-rewrite with a stable form promised at 2.0.0 behind a C++20 requirement. The quieter one is R C API compliance — 1.5.1 removed R_MissingArg, R_UnboundValue, Rf_findVar and Rf_findVarinFrame, the non-API entry points being closed off upstream. The 1.5.x patches since are narrow crash fixes, which reads as consolidation before the 2.0.0 break.
◆ Prediction
Expect 2.0.0 to land the stable C/C++ API behind a C++20 toolchain floor, with more of the existing function surface threaded in the interim. The package has announced both moves in its own release notes.
EpiNow2
0.0ANALYTICS
EpiNow2 unified its model interface, then went back to deepen the estimators behind it
◆ Current state
EpiNow2 estimates reproduction numbers, infections and delay distributions from incomplete epidemiological reporting data. 1.8.0 was the structural turning point: every main modelling function now returns a consistent S3 object with `fit`, `args` and `observations`, reachable through shared accessors. The releases either side of it work on estimator quality — accumulation of irregularly reported data in 1.7.0, and a substantial expansion of `estimate_truncation()` in 1.9.0.
◆ Where it's heading
The package spent this window paying down interface debt and is now extending from the tidier base. Options that existed only for `estimate_infections()` have been propagated outward: `estimate_truncation()` gained the full `dist_spec` delay families, `obs_opts()` observation model selection between Poisson and negative binomial, and the `likelihood` and `return_likelihood` settings that make prior-only fits and loo-compatible output possible. Hardcoded assumptions are being replaced by specifiable ones in the same motion — the truncation model's additive noise term was a fixed `sigma ~ normal(0, 1)` prior and is now a `dist_spec` argument.
◆ Prediction
Expect the remaining modelling functions to keep converging on the shared options interface, since the last two releases have each moved another function onto it. A new `estimate_dist()` for interval-censored linelist data suggests delay estimation is the area still gaining surface.
Alternatives to cheapr and EpiNow2
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cheapr or EpiNow2.
n1qn1c
A Fortran-descended optimizer got thread-safe, then found two flags that never worked.
ggstatsplot
ggstatsplot reached 1.0 by adding tests, having outsourced its statistics years ago.
collapse
collapse got a JSS paper and a 7x fmean speedup in the same release.
gtsummary
gtsummary is quietly rebuilding itself around analysis results data, one table verb at a time.
broadcast
broadcast is filling in NumPy-style array broadcasting for R, operator by operator.
See all cheapr alternatives → · See all EpiNow2 alternatives →
Recent activity from cheapr and EpiNow2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agocheaprrep_len_ crash on shrinking lengths fixed
- 1mo agoEpiNow2estimate_truncation gains full delay and observation options
- 4mo agocheaprNon-API R internals removed
- 4mo agocheaprParallelised math, thread control, and a C API rewrite ⚡
- 6mo agoEpiNow2Unified return objects and shared accessors across all models ⚡
- 1y agocheaprSubsetting speedups; sset_col negative-index crash fixed
- 1y agocheaprdf_modify added; attribute helpers renamed for intent
- 1y agocheaprcounts and str_coalesce added; reconstruct renamed to rebuild
- 1y agoEpiNow2Patch for an upstream rstan issue
- 1y agoEpiNow2Accumulation for irregularly reported data; unified priors
- 1y agoEpiNow2Matern kernel spectral density fix and GP prior revert
- 1y agoEpiNow2Gaussian Process model improvements and explicit defaults
Frequently asked questions
What is the difference between cheapr and EpiNow2?
Both compete on the same themes — r-package — within Analytics. cheapr and EpiNow2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cheapr better than EpiNow2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cheapr and EpiNow2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cheapr?
Top cheapr alternatives in Analytics are ranked by recent ship velocity. Browse the "cheapr alternatives" section above for the current picks, or visit /alternatives/cheapr-r for the full list with editorial commentary on each.
What are the best alternatives to EpiNow2?
Top EpiNow2 alternatives in Analytics are ranked by recent ship velocity. Browse the "EpiNow2 alternatives" section above for the current picks, or visit /alternatives/epinow2 for the full list with editorial commentary on each.