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Comparison · Analytics
cfr vs webchem
A side-by-side editorial comparison of cfr and webchem — release velocity, themes, recent moves, and the top alternatives to consider.
cfr vs webchem: at a glance
What is cfr?
cfr packaged delay-corrected severity estimation, then went quiet on maintenance.
The package estimates disease severity and case ascertainment while correcting for the delay between a case being reported and its outcome being known. After the 0.1.1 rework of the estimation internals and a maintainer handover to Adam Kucharski, activity dropped to a vignette and an R-devel compatibility patch in February 2025.
What is webchem?
Adding chemical databases with one hand while public ones close programmatic access with the other.
webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.
cfr vs webchem: editorial side-by-side
cfr
0.0ANALYTICS
cfr packaged delay-corrected severity estimation, then went quiet on maintenance.
◆ Current state
The package estimates disease severity and case ascertainment while correcting for the delay between a case being reported and its outcome being known. After the 0.1.1 rework of the estimation internals and a maintainer handover to Adam Kucharski, activity dropped to a vignette and an R-devel compatibility patch in February 2025.
◆ Where it's heading
The methodological work is done and consolidated: likelihood approximation is now selected automatically from outbreak size and an initial severity estimate, and the internals were renamed with a dot prefix to close the public surface down to cfr_static(), cfr_rolling() and the data-preparation generic. Releases since have been documentation and compatibility only.
◆ Prediction
The 0.1.0 notes flagged time-varying ascertainment as future work and it has not appeared in the two releases since; nothing in these entries indicates when or whether it lands.
webchem
0.0ANALYTICS
Adding chemical databases with one hand while public ones close programmatic access with the other.
◆ Current state
webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.
◆ Where it's heading
Two opposing forces run through these entries. The package keeps widening its coverage — ChEMBL in 1.2.0, LIPID MAPS and SwissLipids identifiers via Wikidata, structure images, Mol export — while the open, unauthenticated end of the chemical web keeps contracting. The other consistent thread is interface harmonisation: successive releases have converged the get_* functions on the same query and from arguments, tibble returns, and CAS reformatting, so the package feels like one interface rather than a dozen wrappers.
◆ Prediction
Expect further defunct functions and URL repairs as more providers move behind keys or shut down, alongside occasional additions of sources that remain open. The entries show no sign of a general credential-management layer, which is what a package facing this trend would eventually need.
Alternatives to cfr and webchem
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cfr or webchem.
maplegend
The legend engine mapsf spun out, now covering legend types the parent map package can draw.
lang
R help pages translated on demand by whichever LLM you point it at.
mapsf
Thematic mapping in base R that finally got a theming system, then spent two years polishing legends.
qualtRics
qualtRics moved its contact functions onto XM Directory days before the old endpoints died.
fabletools
The tidyverts forecasting core rebuilt model combination on full residual covariance.
Recent activity from cfr and webchem
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agowebchemRepairs broken URLs; ChemSpider check now needs a key
- 1y agocfrR-devel difftime patch and an individual-data vignette
- 2y agocfrSeverity estimator picks its own likelihood approximation
- 2y agocfrDelay-corrected severity and ascertainment estimation on CRAN ⚡
- 3y agowebchemChemIDplus and PAN queries removed as sources shut down ⚡
- 3y agowebchemAdds ChEMBL access for bioactive compound data
- 4y agowebchemcir_query() returns a tibble, a breaking change
- 4y agowebchemAdds Mol structure export; aw_query renamed to bcpc_query
- 5y agowebchemFetches LIPID MAPS and SwissLipids identifiers from Wikidata
Frequently asked questions
What is the difference between cfr and webchem?
They serve adjacent needs but don't currently overlap on shipped themes. cfr and webchem are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cfr better than webchem?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cfr and webchem are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cfr?
Top cfr alternatives in Analytics are ranked by recent ship velocity. Browse the "cfr alternatives" section above for the current picks, or visit /alternatives/cfr for the full list with editorial commentary on each.
What are the best alternatives to webchem?
Top webchem alternatives in Analytics are ranked by recent ship velocity. Browse the "webchem alternatives" section above for the current picks, or visit /alternatives/webchem for the full list with editorial commentary on each.