discrim
discrim settled into a thin engine shim after handing its model definitions to parsnip.
Comparison · Analytics
bonsai vs ggpubr
A side-by-side editorial comparison of bonsai and ggpubr — release velocity, themes, recent moves, and the top alternatives to consider.
bonsai vs ggpubr: at a glance
What is bonsai?
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
What is ggpubr?
ggpubr reached 1.0.0 with p-value formatting presets for specific journals
ggpubr adds publication-ready statistics and annotation to ggplot2. Two releases define its capability: 0.5.0 introduced the stat_*_test family and geom_pwc() for pairwise comparison brackets, and 1.0.0 added p-value formatting presets matching named journal house styles. In between, most releases are ggplot2 and dplyr deprecation chasing.
bonsai vs ggpubr: editorial side-by-side
bonsai
0.0ANALYTICS
bonsai keeps widening tidymodels' boosted-tree engine bench, catboost most recently
◆ Current state
bonsai exists to attach non-core tree engines to parsnip's boost_tree() and rand_forest(), and the release history reads as a steady accumulation of them: partykit, aorsf, lightgbm, and now catboost. The 0.4.x line is spent making catboost behave like a full tidymodels citizen rather than adding anything new.
◆ Where it's heading
Each engine follows the same arc — land it, then close the gaps that keep it from tuning cleanly (parameter naming, multi_predict, threading, case weights). Recent work is squarely in that second phase for catboost, with dials supplying the matching parameter objects on its own release schedule. Bug-fix density is high relative to new surface.
◆ Prediction
Expect the catboost integration to keep filling in tuning and GPU-related arguments before any further engine is added; the entries give no signal about which engine would come next.
ggpubr
0.0ANALYTICS
ggpubr reached 1.0.0 with p-value formatting presets for specific journals
◆ Current state
ggpubr adds publication-ready statistics and annotation to ggplot2. Two releases define its capability: 0.5.0 introduced the stat_*_test family and geom_pwc() for pairwise comparison brackets, and 1.0.0 added p-value formatting presets matching named journal house styles. In between, most releases are ggplot2 and dplyr deprecation chasing.
◆ Where it's heading
The package is moving from drawing statistics to matching the conventions of where they get published - style presets are a different kind of feature from a new test. That sits on a persistent maintenance load: after_stat migrations, linewidth parameters, R-devel changing how the Wilcoxon test handles ties. ggpubr absorbs upstream deprecations so that figure code written years ago keeps rendering.
◆ Prediction
Expect the preset list to grow as users request their own journals' conventions, and the deprecation-chasing to continue with each ggplot2 release; the statistical test coverage looks complete enough that additions there would be surprising.
Alternatives to bonsai and ggpubr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bonsai or ggpubr.
dbparser
dbparser shed its database and CSV writers to become just a DrugBank parser.
desirability2
desirability2 is making multi-metric model selection a first-class tidymodels step.
crosstalk
crosstalk is frozen infrastructure: four releases in five years, mostly CRAN upkeep.
cmdstanr
cmdstanr keeps adding fast approximations beside full HMC, and fighting Windows toolchains.
comtradr
comtradr's 1.0 line is a long tail of patches against a brittle UN trade API.
See all bonsai alternatives → · See all ggpubr alternatives →
Recent activity from bonsai and ggpubr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoggpubrJournal-specific p-value formatting presets in 1.0.0 ⚡
- 2mo agobonsaicatboost gains multi_predict() and corrected tuning parameters
- 5mo agoggpubrRaises R and dplyr minimums, migrates off deprecated syntax
- 9mo agoggpubrPins Wilcoxon p-values against an R-devel change
- 1y agoggpubrFixes after_stat() namespace failures in reverse dependencies
- 1y agobonsaicatboost engine added to boost_tree()
- 1y agobonsailightgbm accepts sparse matrices for fit and predict
- 2y agobonsaiaorsf fit failure in multisession workers fixed
- 2y agobonsaiaorsf engine added; lightgbm gains dataset params and case weights
- 3y agoggpubrggadjust_pvalue() and reproducible jitter seeds
- 3y agobonsailightgbm num_leaves becomes tunable; alias arguments disallowed
- 3y agoggpubrgeom_pwc() and the stat_*_test family arrive ⚡
Frequently asked questions
What is the difference between bonsai and ggpubr?
They serve adjacent needs but don't currently overlap on shipped themes. bonsai and ggpubr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bonsai better than ggpubr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bonsai and ggpubr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bonsai?
Top bonsai alternatives in Analytics are ranked by recent ship velocity. Browse the "bonsai alternatives" section above for the current picks, or visit /alternatives/bonsai-r for the full list with editorial commentary on each.
What are the best alternatives to ggpubr?
Top ggpubr alternatives in Analytics are ranked by recent ship velocity. Browse the "ggpubr alternatives" section above for the current picks, or visit /alternatives/ggpubr for the full list with editorial commentary on each.