paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
bittermelon vs treespace
A side-by-side editorial comparison of bittermelon and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
bittermelon vs treespace: at a glance
What is bittermelon?
bittermelon is growing from binary bitmaps toward greyscale and color glyphs
The package manipulates bitmap fonts and bitmaps in R, and the recent direction is widening what a glyph can be. v2.3.1 adds greyscale font support by reading the experimental yaff levels property into pixmap glyphs with alpha derived from the level fraction, and makes writing a multi-colored glyph an error rather than silently clamping it. Earlier releases built out the same surface: bm_extract(), an interactive pixel picker, data frame coercion, and format support for other packages' bitmap types.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
bittermelon vs treespace: editorial side-by-side
bittermelon
0.0ANALYTICS
bittermelon is growing from binary bitmaps toward greyscale and color glyphs
◆ Current state
The package manipulates bitmap fonts and bitmaps in R, and the recent direction is widening what a glyph can be. v2.3.1 adds greyscale font support by reading the experimental yaff levels property into pixmap glyphs with alpha derived from the level fraction, and makes writing a multi-colored glyph an error rather than silently clamping it. Earlier releases built out the same surface: bm_extract(), an interactive pixel picker, data frame coercion, and format support for other packages' bitmap types.
◆ Where it's heading
Two things are converging. The representation is moving beyond one-bit glyphs — pixmaps, color, and now greyscale levels with transparency — while the API gets stricter about the boundary between them, refusing to quietly downcast a color glyph on write. Separately, the package has been shedding weight: the embedded monobit copy was removed once it outgrew CRAN size limits, pushing format breadth onto a user-installed dependency.
◆ Prediction
Expect further greyscale and color work now that levels parsing exists — most likely writing that format rather than only reading it, since the write path is where the current release chose to draw a hard error instead.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to bittermelon and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bittermelon or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all bittermelon alternatives → · See all treespace alternatives →
Recent activity from bittermelon and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agobittermelonGreyscale font reading arrives; color glyphs no longer clamp silently
- 6mo agobittermelonBitmap extraction and a supported-format predicate
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 1y agobittermelonData frame coercion and an interactive pixel picker
- 2y agobittermelonEmbedded monobit removed; broader format support now needs a manual install
- 2y agobittermelonCombining-character test fixed after a Unicode package change
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 3y agobittermelonHex fonts can be read selectively by code point
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between bittermelon and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. bittermelon and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bittermelon better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bittermelon and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bittermelon?
Top bittermelon alternatives in Analytics are ranked by recent ship velocity. Browse the "bittermelon alternatives" section above for the current picks, or visit /alternatives/bittermelon-r for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.