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mlr3mbo picked its defaults from a benchmark study, not from taste
Comparison · Analytics
bayesplot vs cmdstanr
A side-by-side editorial comparison of bayesplot and cmdstanr — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:stan
bayesplot vs cmdstanr: at a glance
What is bayesplot?
bayesplot keeps widening its posterior-check catalogue while absorbing each ggplot2 break.
bayesplot supplies the plotting layer for Stan-adjacent Bayesian workflows: posterior predictive checks, MCMC diagnostics and LOO diagnostics. Releases through 2025 alternate between new plot families and keeping pace with ggplot2, which changed behavior twice in the visible window. Contributions increasingly arrive from outside the core Stan team.
What is cmdstanr?
cmdstanr keeps adding fast approximations beside full HMC, and fighting Windows toolchains.
cmdstanr is the lightweight R interface to CmdStan, shelling out to the Stan binary rather than embedding it. The visible releases pair inference-method expansion, with laplace and pathfinder arriving in 0.7.0, against a continuous effort to make installation work on Windows. The most recent releases are dominated by CmdStan version compatibility and numerical fixes in the loo path.
bayesplot vs cmdstanr: editorial side-by-side
bayesplot
0.0ANALYTICS
bayesplot keeps widening its posterior-check catalogue while absorbing each ggplot2 break.
◆ Current state
bayesplot supplies the plotting layer for Stan-adjacent Bayesian workflows: posterior predictive checks, MCMC diagnostics and LOO diagnostics. Releases through 2025 alternate between new plot families and keeping pace with ggplot2, which changed behavior twice in the visible window. Contributions increasingly arrive from outside the core Stan team.
◆ Where it's heading
Two forces drive the release line: expanding what can be checked visually, and absorbing upstream ggplot2 churn. The 1.13-1.14 pair shows the first, adding LOO-PIT ECDF plots, quantile dot plots and discrete-data handling across the stat family, while 1.12 and 1.15 are largely spent on ggplot2 3.6 and 4.0 compatibility. The recurring new-contributor lists suggest maintenance load is being spread rather than concentrated.
◆ Prediction
Discrete-data support has rolled out plot family by plot family across three releases; the next release most likely continues that sweep and finishes the ggplot2 v4 adaptation.
cmdstanr
0.0ANALYTICS
cmdstanr keeps adding fast approximations beside full HMC, and fighting Windows toolchains.
◆ Current state
cmdstanr is the lightweight R interface to CmdStan, shelling out to the Stan binary rather than embedding it. The visible releases pair inference-method expansion, with laplace and pathfinder arriving in 0.7.0, against a continuous effort to make installation work on Windows. The most recent releases are dominated by CmdStan version compatibility and numerical fixes in the loo path.
◆ Where it's heading
The package tracks CmdStan closely, and its own work concentrates in two places. One is broadening the method surface so approximate inference sits beside sampling on the same object, extended in 0.8.0 by letting a completed fit supply initial values for the next run. The other is cutting installation friction, which reaches its conclusion in 0.9.0 with RTools45 supported and no additional toolchain setup needed on Windows. Dependency trimming, such as dropping RcppEigen for direct Eigen interop, runs alongside both.
◆ Prediction
The cadence is a CmdStan release followed by a compatibility release here, so expect the next to track a newer CmdStan and continue the effective-sample-size numerical work in the loo method.
Alternatives to bayesplot and cmdstanr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either bayesplot or cmdstanr.
loo
loo keeps rewriting the diagnostics Bayesian modellers read off model comparison
mlr3fselect
mlr3fselect turned feature selection into an asynchronous, distributable job
lime
lime survives on compatibility patches years after its research moment
mlr3measures
mlr3measures is systematically retrofitting sample weights across every metric
mlr3cluster
mlr3cluster went from a handful of clusterers to covering the field
See all bayesplot alternatives → · See all cmdstanr alternatives →
Recent activity from bayesplot and cmdstanr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agocmdstanrRTools45 support; Windows needs no extra toolchain setup
- 4mo agocmdstanrBugfix release: SUNDIALS linking, Windows paths, RTools
- 4mo agocmdstanrCmdStanFit objects usable as initial values; RcppEigen dropped
- 8mo agobayesplotmcmc_scatter gains shape; pre-ggplot2 v4 theme behavior restored
- 11mo agobayesplotQuantile dot plots and broader discrete-data support
- 1y agobayesplotppc_loo_pit_ecdf() added; KM overlays gain truncation control
- 1y agobayesplotggplot2 3.6 compatibility and a run of plot-data fixes
- 2y agobayesplotPatch caps ppc_pit_ecdf evaluation points at 1000
- 2y agobayesplotbins/breaks across histograms; all LOO plots accept psis_object
- 2y agocmdstanrBugfix release with dedicated hpp generation step
- 2y agocmdstanrLaplace and Pathfinder inference methods added ⚡
- 2y agocmdstanrjacobian argument enabled for optimization; assorted fixes
Frequently asked questions
What is the difference between bayesplot and cmdstanr?
Both compete on the same themes — stan — within Analytics. bayesplot and cmdstanr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is bayesplot better than cmdstanr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. bayesplot and cmdstanr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to bayesplot?
Top bayesplot alternatives in Analytics are ranked by recent ship velocity. Browse the "bayesplot alternatives" section above for the current picks, or visit /alternatives/bayesplot for the full list with editorial commentary on each.
What are the best alternatives to cmdstanr?
Top cmdstanr alternatives in Analytics are ranked by recent ship velocity. Browse the "cmdstanr alternatives" section above for the current picks, or visit /alternatives/cmdstanr for the full list with editorial commentary on each.