pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
BAS vs mice
A side-by-side editorial comparison of BAS and mice — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
BAS vs mice: at a glance
What is BAS?
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
BAS performs Bayesian variable selection and model averaging for linear and generalized linear models, sampling from a model space too large to enumerate. The visible history splits cleanly: 2023-2024 added sampling machinery — an adaptive independent MCMC sampler with Horvitz-Thompson estimation, hereditary-constraint counting — while 2.0.0 in late 2025 reworked how sampler output is allocated in C. The 2.0.2 patch is a PROTECT fix for rchk warnings.
What is mice?
mice can finally predict, not just estimate, from multiply imputed data.
mice is the reference implementation of multiple imputation by chained equations, and the default answer to missing data in R. The releases here follow a consistent shape: one or two substantive additions per version, most contributed by outside authors, plus fixes to methods that have been in the package for years. The current 3.19.0 adds predict_mi(), which pools predictions across imputations under Rubin's rules and can return prediction intervals.
BAS vs mice: editorial side-by-side
BAS
0.0INFRA · APIS
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
◆ Current state
BAS performs Bayesian variable selection and model averaging for linear and generalized linear models, sampling from a model space too large to enumerate. The visible history splits cleanly: 2023-2024 added sampling machinery — an adaptive independent MCMC sampler with Horvitz-Thompson estimation, hereditary-constraint counting — while 2.0.0 in late 2025 reworked how sampler output is allocated in C. The 2.0.2 patch is a PROTECT fix for rchk warnings.
◆ Where it's heading
Memory is the binding constraint and the releases say so directly. The hereditary-constraint counter, the GROW option, and the replacement of over-allocation with resizing all attack the same problem: n.models is a guess, and guessing high wastes memory on problems where few unique models are actually visited. The 2.0.0 work was additionally forced by R tightening its C API against non-API calls like SETLENGTH, a constraint every C-heavy CRAN package has been absorbing. Method development has been quiet since 1.7.x.
◆ Prediction
The 1.7.5 notes call the hereditary-constraint counting a first step and say future updates will cover other constraint types, including polynomials, which remain unhandled. That is the one concrete commitment in this history, though nothing since has returned to it.
mice
0.0INFRA · APIS
mice can finally predict, not just estimate, from multiply imputed data.
◆ Current state
mice is the reference implementation of multiple imputation by chained equations, and the default answer to missing data in R. The releases here follow a consistent shape: one or two substantive additions per version, most contributed by outside authors, plus fixes to methods that have been in the package for years. The current 3.19.0 adds predict_mi(), which pools predictions across imputations under Rubin's rules and can return prediction intervals.
◆ Where it's heading
Two things are happening. The imputation method catalogue keeps widening — lasso variants, multivariate PMM, categorical PMM via canonical correlation — while the pooling side is being extended past its original purpose, first to synthetic data, now to predictions on held-out sets. That second thread points at predictive modelling workflows rather than the inferential ones mice was built for. Meanwhile the maintainers keep finding consequential old bugs: the augment() ordered-factor defect in 3.18.0 had been silently degrading ordinal imputations for years.
◆ Prediction
predict_mi() is framed around evaluating predictive performance on test sets, and the ignore argument added in 3.12.0 already exists to hold out rows from the imputation model. Expect the next work to join those up into a fuller train/test story for imputed data, since the pieces are now in place but not yet connected.
Alternatives to BAS and mice
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either BAS or mice.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
Recent activity from BAS and mice
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 8mo agoBASBAS 2.0.2
- 8mo agomicemice 3.19.0 ⚡
- 8mo agoBASBAS 2.0.0
- 1y agomicemice 3.18.0
- 1y agoBASBAS 1.7.5
- 1y agomicemice 3.17.0
- 1y agoBASBAS 1.7.3
- 1y agoBASBAS 1.7.2
- 2y agoBASBAS 1.7.1
- 3y agomicemice 3.16.0
- 3y agomicemice 3.15.0
- 4y agomicemice 3.14.0
Frequently asked questions
What is the difference between BAS and mice?
Both compete on the same themes — r-package — within Infra & APIs. BAS and mice are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is BAS better than mice?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. BAS and mice are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to BAS?
Top BAS alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "BAS alternatives" section above for the current picks, or visit /alternatives/bas for the full list with editorial commentary on each.
What are the best alternatives to mice?
Top mice alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "mice alternatives" section above for the current picks, or visit /alternatives/mice for the full list with editorial commentary on each.