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Comparison · Infra & APIs
b3doc vs rgm
A side-by-side editorial comparison of b3doc and rgm — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
b3doc vs rgm: at a glance
What is b3doc?
A small B-Cubed utility for turning R Markdown into publishable docs
b3doc converts R Markdown to Markdown and rewrites front matter for documentation published by the B-Cubed project, which is its entire remit. Three releases exist: the initial pair of functions, a generalisation of the front-matter replacement, and a hardening pass that removed regex from the replace argument and standardised figures at 300 DPI. It sits in the b-cubed-eu family alongside impIndicator and shares contributors with the wider Belgian biodiversity tooling group.
What is rgm?
A microbiome network model that got itself un-archived by deleting the dependency that killed it.
rgm implements the random graphical model for microbiome interactions across related environments, published in JABES in 2026. The package was archived from CRAN in February 2026 because of its dependency on huge; the recovery release drops that dependency entirely, which cost it the graphical-lasso warm start that used to seed the initial graph — the default is now an empty graph, with warm starts left to the user. A post-processing function returning ggplot diagnostics arrived in the same release.
b3doc vs rgm: editorial side-by-side
b3doc
0.0INFRA · APIS
A small B-Cubed utility for turning R Markdown into publishable docs
◆ Current state
b3doc converts R Markdown to Markdown and rewrites front matter for documentation published by the B-Cubed project, which is its entire remit. Three releases exist: the initial pair of functions, a generalisation of the front-matter replacement, and a hardening pass that removed regex from the replace argument and standardised figures at 300 DPI. It sits in the b-cubed-eu family alongside impIndicator and shares contributors with the wider Belgian biodiversity tooling group.
◆ Where it's heading
The direction is toward predictability over flexibility. The replace argument arrived in 0.2.0 generalising the earlier logo-specific behaviour, then 0.3.0 pulled regex support back out of it because escape characters and over-broad matches caused unintended edits. That is a maintainer choosing a narrower tool that fails obviously over a general one that fails quietly — a reasonable trade for a package that rewrites files in place.
◆ Prediction
Expect continued small releases driven by the documentation pipeline's needs, with output-quality defaults and front-matter handling the likely subjects rather than new functions.
rgm
0.0INFRA · APIS
A microbiome network model that got itself un-archived by deleting the dependency that killed it.
◆ Current state
rgm implements the random graphical model for microbiome interactions across related environments, published in JABES in 2026. The package was archived from CRAN in February 2026 because of its dependency on huge; the recovery release drops that dependency entirely, which cost it the graphical-lasso warm start that used to seed the initial graph — the default is now an empty graph, with warm starts left to the user. A post-processing function returning ggplot diagnostics arrived in the same release.
◆ Where it's heading
Three tags shipped inside two hours on one day, and the notes are candid about why: 1.1.0 held the actual work but was never released, 1.2.0 restated it under a higher version to signal the size of the change, and 1.2.1 answered CRAN pre-test feedback. Beyond the archival recovery, the visible work is housekeeping that had accumulated — a shadowed rmvnorm() definition, roxygen import tags that were silently emitting nothing, leftover C++ template scaffolding, and build artifacts under version control. The diagnostics function is the only genuinely new user-facing capability in the window.
◆ Prediction
The immediate task was restoring availability, and that is done; the open question the entries raise is whether losing the graphical-lasso warm start affects convergence in practice, which the new diagnostic plots are positioned to answer.
Alternatives to b3doc and rgm
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either b3doc or rgm.
WPML
WPML made machine translation the default, and its point releases keep chasing WordPress and page builders.
forestploter
A forest plot package that keeps handing users control of one more graphical detail.
ggInterval
Interval-valued data plotting, spending 2026 making its function names and examples survive CRAN.
contagionchannels
Three releases in ten days, every one of them a CRAN reviewer's correction rather than a code change.
tidyaudit
Pipeline provenance for tidyverse workflows, recording what changed at each step without keeping the data.
Recent activity from b3doc and rgm
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agorgmJournal DOI replaces the preprint; promotional wording removed
- 3mo agorgmBack on CRAN after dropping the dependency that caused archival
- 3mo agorgmUnreleased twin of the CRAN recovery release
- 4mo agob3docRegex dropped from replace; figures standardised at 300 DPI
- 0y agob3docFront-matter replacement generalised beyond the logo
- 1y agob3docInitial release: front-matter updates and Rmd-to-Markdown conversion
- 2y agorgmFirst release: simulation, estimation and post-processing
Frequently asked questions
What is the difference between b3doc and rgm?
Both compete on the same themes — r-package — within Infra & APIs. b3doc and rgm are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is b3doc better than rgm?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. b3doc and rgm are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to b3doc?
Top b3doc alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "b3doc alternatives" section above for the current picks, or visit /alternatives/b3doc for the full list with editorial commentary on each.
What are the best alternatives to rgm?
Top rgm alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "rgm alternatives" section above for the current picks, or visit /alternatives/rgm for the full list with editorial commentary on each.