qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
austraits vs grex
A side-by-side editorial comparison of austraits and grex — release velocity, themes, recent moves, and the top alternatives to consider.
austraits vs grex: at a glance
What is austraits?
The R client for AusTraits spends its releases chasing the dataset it reads.
austraits is the R access layer for the AusTraits plant trait database, and its release history is almost entirely a record of keeping pace with two upstream systems it does not control: the austraits.build data releases and the Zenodo archive that hosts them. The most recent release adds a version-dispatch layer so the same package can read both v4.x and v5.0.0 data. Three of the four visible tags were backfilled to GitHub within 23 minutes of each other, so version order and publication order do not agree.
What is grex?
grex is a lookup table with a version number — it ships when the annotation moves.
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
austraits vs grex: editorial side-by-side
austraits
0.0ANALYTICS
The R client for AusTraits spends its releases chasing the dataset it reads.
◆ Current state
austraits is the R access layer for the AusTraits plant trait database, and its release history is almost entirely a record of keeping pace with two upstream systems it does not control: the austraits.build data releases and the Zenodo archive that hosts them. The most recent release adds a version-dispatch layer so the same package can read both v4.x and v5.0.0 data. Three of the four visible tags were backfilled to GitHub within 23 minutes of each other, so version order and publication order do not agree.
◆ Where it's heading
The package is converging on a stable public vocabulary and a versioned internal. Sites became locations across every join, plot and extract function; the extract_ and print family filled out at 1.0.0; and by 2.2.2 the core functions each carry a switch on the detected data version rather than assuming one schema. The visible cost of that is dependency churn — plotting packages moved to Suggests, which the notes admit can leave core functions unable to run.
◆ Prediction
Given that every release so far has been triggered by an upstream austraits.build or Zenodo change, the next one most likely follows the next data release rather than any independent roadmap. The entries do not indicate new analysis capability being planned in the client itself.
grex
0.0ANALYTICS
grex is a lookup table with a version number — it ships when the annotation moves.
◆ Current state
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
◆ Where it's heading
The annotation refreshes stopped. Between 2017 and 2019 the package tracked org.Hs.eg.db through four versions and added the GTEx V7 identifier set; since then the reference has stood still while the releases turned to packaging. That gap matters more here than it would elsewhere — a stale mapping table silently returns outdated symbols rather than failing, so the package's core asset ages invisibly.
◆ Prediction
Nothing in these entries signals a planned data refresh, and the six-year pattern suggests the next release will again be infrastructure. Users needing current annotations should check which org.Hs.eg.db version is bundled rather than assume the version number reflects it.
Alternatives to austraits and grex
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either austraits or grex.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
See all austraits alternatives → · See all grex alternatives →
Recent activity from austraits and grex
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agogrexgrex 1.9.1: pkgdown on Actions, smaller vignette
- 2y agoaustraitsSupport for AusTraits 5.0.0 data and the rebuilt Zenodo API
- 3y agoaustraitsextract_taxa, lookup_trait and print methods arrive
- 3y agoaustraitsVignette build and extract_ function polish
- 3y agoaustraitssite becomes location across the API; AusTraits 3.0.2+ support
- 7y agogrexgrex 1.9 refreshes the reference to org.Hs.eg.db 3.8.2
- 8y agogrexgrex 1.8 adds GTEx V7 IDs, updates to org.Hs.eg.db 3.6.0
- 8y agogrexgrex 1.7 updates the reference to org.Hs.eg.db 3.4.2
- 8y agogrexgrex 1.6 drops Google Fonts from vignettes
- 9y agogrexgrex 1.5 adds a pkgdown site and refreshes the reference
Frequently asked questions
What is the difference between austraits and grex?
They serve adjacent needs but don't currently overlap on shipped themes. austraits and grex are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is austraits better than grex?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. austraits and grex are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to austraits?
Top austraits alternatives in Analytics are ranked by recent ship velocity. Browse the "austraits alternatives" section above for the current picks, or visit /alternatives/austraits-r for the full list with editorial commentary on each.
What are the best alternatives to grex?
Top grex alternatives in Analytics are ranked by recent ship velocity. Browse the "grex alternatives" section above for the current picks, or visit /alternatives/grex-r for the full list with editorial commentary on each.