rollupTree
The recursive-computation engine under massProps grows the accessors its consumer needed
Comparison · Infra & APIs
artoo vs valr
A side-by-side editorial comparison of artoo and valr — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-packages
artoo vs valr: at a glance
What is artoo?
artoo makes any-to-any clinical dataset conversion lossless by construction.
artoo reads and writes SAS XPORT, CDISC Dataset-JSON, NDJSON, Parquet and RDS around one canonical metadata model, so a conversion between any two formats carries labels, CDISC types, lengths, display formats, controlled-terminology references and sort keys intact. It is pure R with no SAS or Java runtime. It reached CRAN at 0.1.1 and has spent 0.1.2 and 0.1.3 on the character-encoding edges.
What is valr?
valr's interval verbs now read genomic files in place instead of demanding a loaded tibble.
valr reimplements bedtools-style genome interval arithmetic as tidyverse verbs backed by C++. Its long project has been closing the behavioural gap with bedtools — the book-ended interval semantics finally match in 0.10.0, three releases after the deprecation began. The July release also ends the assumption that intervals must be in memory: bed_map(), bed_intersect(), bed_subtract(), bed_coverage() and bed_window() accept a bigWig or bigBed path or URL where an interval table used to go.
artoo vs valr: editorial side-by-side
artoo
2.5INFRA · APIS
artoo makes any-to-any clinical dataset conversion lossless by construction.
◆ Current state
artoo reads and writes SAS XPORT, CDISC Dataset-JSON, NDJSON, Parquet and RDS around one canonical metadata model, so a conversion between any two formats carries labels, CDISC types, lengths, display formats, controlled-terminology references and sort keys intact. It is pure R with no SAS or Java runtime. It reached CRAN at 0.1.1 and has spent 0.1.2 and 0.1.3 on the character-encoding edges.
◆ Where it's heading
Recent work is all about text that does not survive a format change. 0.1.3 adds an invalid_encoding dimension to artoo_checks() that flags bytes which are not valid UTF-8 before a writer aborts on them, accepts the SAS OEM/DOS encoding names, and gives the writers on_invalid = "translit" and "fold" so smart punctuation and accented characters resolve to pinned ASCII instead of failing. The fold tables ship as data specifically so the result is identical on every platform, which is the same determinism argument behind C-locale row sorting in 0.1.0.
◆ Prediction
The new WLATIN1-to-UTF-8 migration article and the width warning on write_xpt() point the next attention at length and truncation semantics rather than at additional formats. These notes name no further target format.
valr
0.0INFRA · APIS
valr's interval verbs now read genomic files in place instead of demanding a loaded tibble.
◆ Current state
valr reimplements bedtools-style genome interval arithmetic as tidyverse verbs backed by C++. Its long project has been closing the behavioural gap with bedtools — the book-ended interval semantics finally match in 0.10.0, three releases after the deprecation began. The July release also ends the assumption that intervals must be in memory: bed_map(), bed_intersect(), bed_subtract(), bed_coverage() and bed_window() accept a bigWig or bigBed path or URL where an interval table used to go.
◆ Where it's heading
Two arcs converge here. One is compatibility: min_overlap arrived with a deprecation warning in 0.9.0 and its default flipped from 0 to 1 in 0.10.0, so book-ended intervals are excluded by default as bedtools does, with the internal calculations in bed_closest() and friends deliberately left counting them. The other is the file-backed path, which grew out of the cpp11bigwig dependency adopted in 0.8.3 for read_bigwig() and re-exported in 0.9.0 — reading a file became querying one. Underneath, the C++ base keeps getting lighter: Rcpp swapped for cpp11, rlang cut to a single function, per-group memory copies removed from three verbs.
◆ Prediction
Only five verbs take a file argument today and bed_closest(), bed_glyph() and the statistical verbs do not, so extending the file-backed path across the rest of the API is the obvious follow-up. The deprecated tibble re-exports and the now-defunct n_fields argument suggest continued removal of the compatibility layer in the next minor release.
Alternatives to artoo and valr
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either artoo or valr.
massProps
A mass-properties rollup spends a year on documentation and follows its sibling's API
writeAlizer
Six months of releases and not one of them touched the scoring models
samplr
A cognitive-science sampling package ships once, then goes quiet for eighteen months
stochvol
A Bayesian volatility sampler in its maintenance decade, paying for its own speed
midr
A black-box interpreter reaches CRAN, then learns multi-class and survival responses
Recent activity from artoo and valr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 28d agoartooEncoding checks and translit/fold modes for the writers
- 1mo agovalrInterval verbs read bigWig and bigBed files directly ⚡
- 1mo agoartoonoLD check fix; codec unchanged
- 2mo agoartooInitial CRAN release after resubmission
- 2mo agoartooLossless any-to-any CDISC dataset conversion in pure R ⚡
- 7mo agovalrbed_slop() and bed_flank() preserve input row order
- 8mo agovalrmin_overlap introduced; C++ backend moves from Rcpp to cpp11
- 1y agovalrTest updated for ggplot2 3.6.0
- 1y agovalrread_bigwig() switches to cpp11bigwig; read_gtf() deprecated
- 1y agovalrCRAN Rd link NOTE and maintainer email change
Frequently asked questions
What is the difference between artoo and valr?
Both compete on the same themes — r-packages — within Infra & APIs. artoo is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is artoo better than valr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. artoo is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to artoo?
Top artoo alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "artoo alternatives" section above for the current picks, or visit /alternatives/artoo for the full list with editorial commentary on each.
What are the best alternatives to valr?
Top valr alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "valr alternatives" section above for the current picks, or visit /alternatives/valr for the full list with editorial commentary on each.